Browse Element(s) Details


Os.38177.1.S1_at

Description gb:AK066520.1
DB_XREF= gi:32976538
TID=Os.38177.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38177 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069B18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069B18, full insert sequence.
FL= gb:AK066520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6241011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62380Os.42475.1.S1_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S2_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62390Os.6301.1.S1_at11/111+36432257..36434864Growth regulator protein, putative, expressed
LOC_Os01g62400Os.55656.1.S1_at9/111+36444018..36445236hypothetical protein
LOC_Os01g62410Os.38177.1.S1_at11/111+36449635..36455336Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g62420Os.12423.1.S1_at11/111+36456283..36459568Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g62420Os.11197.2.S1_x_at1/111+36456283..36459568Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g62430Os.22076.1.S1_a_at11/111+36462670..36464140Elicitor-responsive protein 1, putative, expressed
LOC_Os01g62440Os.13498.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_x_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440OsAffx.2388.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.52574.2.S1_x_at1/111+36465551..36473132RNB-like protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38177.1.S1_at--951--5471Chr01:36454608..36454632 (25 bp)
GAACTTTGCGCATACAACCAATTTG
LOC_Os01g62410
Os.38177.1.S1_at--72--2871Chr01:36454877..36454901 (25 bp)
AAGTGTCTTTCTGAGCTGATGAGCT
LOC_Os01g62410
Os.38177.1.S1_at--645--9911Chr01:36454980..36455004 (25 bp)
TACTGAGTACAGAAGGTCCACCAAT
LOC_Os01g62410
Os.38177.1.S1_at--1059--9311Chr01:36455010..36455034 (25 bp)
TCCCATCTCTTCTAACCAAGGTGTA
LOC_Os01g62410
Os.38177.1.S1_at--508--6311Chr01:36455040..36455064 (25 bp)
GATGAGCGACACTCTGTAGAAGAAT
LOC_Os01g62410
Os.38177.1.S1_at--180--10031Chr01:36455056..36455080 (25 bp)
TAGAAGAATACATTGCTCGCTGCAC
LOC_Os01g62410
Os.38177.1.S1_at--801--4791Chr01:36455070..36455094 (25 bp)
GCTCGCTGCACTTTGTGAATTTACA
LOC_Os01g62410
Os.38177.1.S1_at--910--6071Chr01:36455186..36455210 (25 bp)
GAGTATTCCTCATTGGATTGTCAGA
LOC_Os01g62410
Os.38177.1.S1_at--693--10351Chr01:36455211..36455235 (25 bp)
TTTATTTTGTCTTGTGCTTTCCCTT
LOC_Os01g62410
Os.38177.1.S1_at--578--3671Chr01:36455233..36455257 (25 bp)
CTTTGTCGCGAAACAGCCAGGGTCT
LOC_Os01g62410
Os.38177.1.S1_at--645--4411Chr01:36455248..36455272 (25 bp)
GCCAGGGTCTGCTCTGTGTAACAAT
LOC_Os01g62410
Target Sequence 
GAACTTTGCGCATACAACCAATTTGGATGTAACCTAATCTTGGAAAATGCAGGAACTGACATCAATCTGATGAAGTAGGA
CAGATGAGCTGAAGTGTCTTTCTGAGCTGATGAGCTTTTTCTCAAAGTATCACGATTAAACCACAACAAGATCAAACAAA
ACCGGTGGAGAAGAATTCCAGAATTGAAGCTTTGTACTGAGTACAGAAGGTCCACCAATCATTCTCCCATCTCTTCTAAC
CAAGGTGTACAAAAGATGAGCGACACTCTGTAGAAGAATACATTGCTCGCTGCACTTTGTGAATTTACAGTTAGAAAATT
CAGATTGTAGAAGCCACAGGTGTGTACAAAACAACAACGAAAAAAAATTATAGTGTTAGAACGTCATTATAGCTGAATAA
GAGTATTCCTCATTGGATTGTCAGATTTATTTTGTCTTGTGCTTTCCCTTTGTCGCGAAACAGCCAGGGTCTGCTCTGTG
TAACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis