Browse Element(s) Details


Os.12423.1.S1_at

Description gb:AK059805.1
DB_XREF= gi:32969823
TID=Os.12423.1
CNT=102
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative triosephosphate isomerase (P0408C03.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-G07, full insert sequence.
FL= gb:AK059805.1 gb:AK099310.1 gb:AK104461.1 gb:AK100708.1 gb:AK104017.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6242011/11Triosephosphate isomerase, cytosolic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62390Os.6301.1.S1_at11/111+36432257..36434864Growth regulator protein, putative, expressed
LOC_Os01g62400Os.55656.1.S1_at9/111+36444018..36445236hypothetical protein
LOC_Os01g62410Os.38177.1.S1_at11/111+36449635..36455336Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g62420Os.12423.1.S1_at11/111+36456283..36459568Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g62420Os.11197.2.S1_x_at1/111+36456283..36459568Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g62430Os.22076.1.S1_a_at11/111+36462670..36464140Elicitor-responsive protein 1, putative, expressed
LOC_Os01g62440Os.13498.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_x_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440OsAffx.2388.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.52574.2.S1_x_at1/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62450NANA1+36481330..36481541hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0019253biological_processreductive pentose-phosphate cycle
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004807molecular_functiontriose-phosphate isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12423.1.S1_at--593--1131Chr01:36458611..36458635 (25 bp)
AGTCCTGCAGTTGCTGAATCAACCA
LOC_Os01g62420
Os.12423.1.S1_at--358--2751Chr01:36458819..36458843 (25 bp)
AAGAACTTGCTGCTAAACCTGATGT
LOC_Os01g62420
Os.12423.1.S1_at--426--2631Chr01:36458834..36458858 (25 bp)
AACCTGATGTTGATGGATTCCTTGT
LOC_Os01g62420
Os.12423.1.S1_at--628--511Chr01:36459168..36459192 (25 bp)
ATCGTAGGAGTTAATGCTGCCAATT
LOC_Os01g62420
Os.12423.1.S1_at--1100--671Chr01:36459200..36459224 (25 bp)
ATGACATGTTTGACCAGCTTGCTTT
LOC_Os01g62420
Os.12423.1.S1_at--971--7111Chr01:36459238..36459262 (25 bp)
GTCAGTGAACTCCATATCGTTCCAT
LOC_Os01g62420
Os.12423.1.S1_at--765--251Chr01:36459251..36459275 (25 bp)
ATATCGTTCCATAGAGCATGCAGCC
LOC_Os01g62420
Os.12423.1.S1_at--1090--3831Chr01:36459330..36459354 (25 bp)
CTGAAAGTGCCGTTAATGTCTGTAT
LOC_Os01g62420
Os.12423.1.S1_at--659--7351Chr01:36459411..36459435 (25 bp)
GTGAAGTACTGTCCTTTGCATGTTT
LOC_Os01g62420
Os.12423.1.S1_at--50--6811Chr01:36459451..36459475 (25 bp)
GTTTTCGTAGTCAAACGGGCTATCA
LOC_Os01g62420
Os.12423.1.S1_at--930--351Chr01:36459544..36459568 (25 bp)
ATAATAACCGGGTCATTCGCTTGTT
LOC_Os01g62420
Target Sequence 
AGTCCTGCAGTTGCTGAATCAACCAGGATTATTTACAGAGGCTCCGTAAATGGAGCAAACTGCAAAGAACTTGCTGCTAA
ACCTGATGTTGATGGATTCCTTGTTGGAGGAGCTTCATTGAAGCCTGAATTTGTGGACATCATCAAGTCTNGCTACCGTC
AAGTNTTNCTGCTTAGTGTTNTGGGTTGCAACCAGATGATCGTAGGAGTTAATGCTGCCAATTTTAAGTTATGACATGTT
TGACCAGCTTGCTTTGTTATATNTCGAAGTCAGTGAACTCCATATCGTTCCATAGAGCATGCAGCCNCCTGTGGTTGCTT
TTTTTNCTTTTTGACTTTTTCTCCCGAGAGGATCAGATGAACTGAAAGTGCCGTTAATGTCTGTATTATCAGAAGTTTGT
TGATGGCTTGATGCTATAATAGTTGAACCTGATACTTCCTGAGTGAAGTACTGTCCTTTGCATGTTTGATTGATGATTAC
TTGTTTTCGTAGTCAAACGGGCTATCATGAAGGATATACTACATGTTTGTTAAGTTTGTTACTTNGTGATTTAAGCAATT
GTTGATTAATGCAGAATAATAACCGGGTCATTCGCTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis