Browse Element(s) Details


Os.9615.1.S1_at

Description gb:AK066513.1
DB_XREF= gi:32976531
TID=Os.9615.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative laccase (P0406G08.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068J22, full insert sequence.
FL= gb:AK066513.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6249011/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62450NANA1+36481330..36481541hypothetical protein
LOC_Os01g62460Os.11866.1.S1_at11/111+36485157..36488383SCARECROW, putative, expressed
LOC_Os01g62469OsAffx.21751.1.S1_at11/111+36491268..36491989NA
LOC_Os01g62480Os.12346.1.S1_at11/111+36492802..36495788Multicopper oxidase family protein, expressed
LOC_Os01g62480Os.54525.1.S1_x_at1/111+36492802..36495788Multicopper oxidase family protein, expressed
LOC_Os01g62490Os.9615.1.S1_at11/111+36504141..36506976Multicopper oxidase family protein, expressed
LOC_Os01g62500Os.33529.1.S1_at11/111+36509312..36514823AFG3-like protein 2, putative, expressed
LOC_Os01g62510OsAffx.9554.1.S1_at11/111+36515551..36518530WRKY DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9615.1.S1_at--1026--91Chr01:36504817..36504841 (25 bp)
ATTCGCTTCCTCGTGGACAATCCAG
LOC_Os01g62490
Os.9615.1.S1_at--1076--71Chr01:36504628..36504652 (25 bp)
ATTGCCACTTGGAGGTGCACGTCAG
LOC_Os01g62490
Os.9615.1.S1_at--453--5651Chr01:36504489..36504513 (25 bp)
GACAGAGATTGCGTCTTGCTCATCA
LOC_Os01g62490
Os.9615.1.S1_at--132--9671Chr01:36504467..36504491 (25 bp)
TCAGCTTCCCTGTAGGATACTCGGA
LOC_Os01g62490
Os.9615.1.S1_at--26--6491Chr01:36504444..36504468 (25 bp)
GATACTCCTCTGCTTTTGCTAGCTT
LOC_Os01g62490
Os.9615.1.S1_at--524--71Chr01:36504409..36504433 (25 bp)
ATTGCTCGCGGTTGGTGCTATGGAA
LOC_Os01g62490
Os.9615.1.S1_at--767--631Chr01:36504385..36504409 (25 bp)
ATGCTTTTCTTGTAGTGGTGTGCCT
LOC_Os01g62490
Os.9615.1.S1_at--594--8611Chr01:36504370..36504394 (25 bp)
TGGTGTGCCTTTCCGAAGTTGTGTC
LOC_Os01g62490
Os.9615.1.S1_at--822--2811Chr01:36504355..36504379 (25 bp)
AAGTTGTGTCGTCATCTGGTTAGCT
LOC_Os01g62490
Os.9615.1.S1_at--467--8651Chr01:36504276..36504300 (25 bp)
TGGGCTTCTCATTATTATTTGTCAC
LOC_Os01g62490
Os.9615.1.S1_at--112--351Chr01:36504223..36504247 (25 bp)
ATAAATCCACGTTCATCCCAATAAT
LOC_Os01g62490
Target Sequence 
ATTCGCTTCCTCGTGGACAATCCAGGGGTATGGTTCATGCATTGCCACTTGGAGGTGCACGTCAGCTGGGGCCTGAAGAT
GGCATGGGTGGTGCAGGACGGGAGCCTACCCAACCAGAAGATCCTCCCTCCGCCGTCCGATCTCCCCAAATGCTAACCGA
TCGACACCGGCCGACCAGAGACAGAGATTGCGTCTTGCTCATCAGCTTCCCTGTAGGATACTCGGATACTCCTCTGCTTT
TGCTAGCTTGCTTCTGTTGATTGCTCGCGGTTGGTGCTATGGAATGCTTTTCTTGTAGTGGTGTGCCTTTCCGAAGTTGT
GTCGTCATCTGGTTAGCTGATGTACGAATGATCATGGGCAAGTTTCTTGATCAGACGCAAGGCCTTTAATNTTGGGCTTC
TCATTATTATTTGTCACCTTTTGTAACATATGAGGGAGCTGGATCATAAATCCACGTTCATCCCAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis