Browse Element(s) Details


Os.53617.1.S1_at

Description gb:AK101155.1
DB_XREF= gi:32986364
TID=Os.53617.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033027E14, full insert sequence.
FL= gb:AK101155.1 gb:AK073595.1 gb:AK102649.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4761011/11Xylanase inhibitor protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47550Os.9964.1.S1_at11/1111+28177983..28179140Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.50837.1.S1_at11/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.49578.1.S1_x_at1/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.49578.1.S1_x_at11/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.50837.1.S1_at2/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47580Os.9347.1.S1_at11/1111+28195854..28197103Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47590Os.51920.1.S1_at11/1111+28197991..28199150Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47600Os.32890.1.S1_at11/1111+28200834..28202000Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47610Os.53617.1.S1_at11/1111+28202408..28203600Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47620OsAffx.7443.1.S1_at11/1111+28204625..28205116Zinc finger, C2H2 type family protein
LOC_Os11g47630Os.51307.1.S1_at11/1111+28208091..28208934Zinc finger, C2H2 type family protein, expressed
LOC_Os11g47640OsAffx.19426.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640Os.52655.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640OsAffx.14237.1.S1_at1/1111+28211601..28215464expressed protein
LOC_Os11g47650Os.9833.1.S1_at11/1111+28216432..28219984expressed protein
LOC_Os11g47650Os.54085.1.S1_at3/1111+28216432..28219984expressed protein
LOC_Os11g47660OsAffx.19427.1.S1_at11/1111+28221817..28222928hypothetical protein
LOC_Os11g47660Os.24409.1.S1_at1/1111+28221817..28222928hypothetical protein
LOC_Os11g47670Os.55400.2.S1_at11/1111+28223321..28224191Thaumatin family protein, expressed
LOC_Os11g47680OsAffx.19428.1.S1_s_at11/1111+28225195..28225949Thaumatin family protein, expressed
LOC_Os11g47690OsAffx.19429.1.S1_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47690OsAffx.19429.1.S1_x_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47700OsAffx.19430.1.S1_at11/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47700OsAffx.19429.1.S1_x_at1/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47710Os.8885.1.S1_at11/1111+28228023..28230234Charged multivesicular body protein 2a, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53617.1.S1_at--640--7291Chr11:28202885..28202909 (25 bp)
GTGCGGTTCTACAACGAGAGCTCGT
LOC_Os11g47610
Os.53617.1.S1_at--206--5711Chr11:28202858..28202882 (25 bp)
GACTACAACTACTTCGAGACGCGGC
LOC_Os11g47610
Os.53617.1.S1_at--786--7191Chr11:28202706..28202730 (25 bp)
GTCGGTGCAGGACGATGCCAACTAC
LOC_Os11g47610
Os.53617.1.S1_at--1005--9611Chr11:28202674..28202698 (25 bp)
TCATGCTCTGGGATCGCTACTACGA
LOC_Os11g47610
Os.53617.1.S1_at--1130--9451Chr11:28202635..28202659 (25 bp)
TCGGCCGTGCCATCAAAGACATTGT
LOC_Os11g47610
Os.53617.1.S1_at--1096--7151Chr11:28202612..28202636 (25 bp)
GTCTAATTGCAATGTTACTCCAGTG
LOC_Os11g47610
Os.53617.1.S1_at--252--6631Chr11:28202565..28202589 (25 bp)
GTTGTTTACCAACCTGCATTGCGTC
LOC_Os11g47610
Os.53617.1.S1_at--56--4951Chr11:28202550..28202574 (25 bp)
GCATTGCGTCATCTGTTACTATCTG
LOC_Os11g47610
Os.53617.1.S1_at--690--6971Chr11:28202526..28202550 (25 bp)
GTACCCGTCTACTGGCATATGCATG
LOC_Os11g47610
Os.53617.1.S1_at--1107--631Chr11:28202508..28202532 (25 bp)
ATGCATGTTCGTATGGGTCAGGCTT
LOC_Os11g47610
Os.53617.1.S1_at--1136--8771Chr11:28202431..28202455 (25 bp)
TGTTTCACTGTGCTGTTTACCATAG
LOC_Os11g47610
Target Sequence 
GTGCGGTTCTACAACGAGAGCTCGTGCGACTACAACTACTTCGAGACGCGGCCGTTCTGGGGCGCGTGGAGGACGTGGAC
GTCGAGGTTCCCGGCGGCGCGGGTGCAGGTGGGGTGGCCGGCGATGGAGGAGATGAGCGGGTTCGTGGACCCGCAGACGC
TGCGGGAGAGCGTGCTATCGTCGGTGCAGGACGATGCCAACTACGGCGGCGTCATGCTCTGGGATCGCTACTACGACAAG
ATCACCGGATTCGGCCGTGCCATCAAAGACATTGTCTAATTGCAATGTTACTCCAGTGTTTATACTACATGGTTCACTGT
GTTGTTTACCAACCTGCATTGCGTCATCTGTTACTATCTGTACCCGTCTACTGGCATATGCATGTTCGTATGGGTCAGGC
TTGAAAGTAGTATGATTATGTTAATTTAGTTTTGAAATATAAAAGAATCCAGCATGTTTCACTGTGCTGTTTACCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis