Browse Element(s) Details


Os.8885.1.S1_at

Description gb:AB117996.1
DB_XREF= gi:42733479
GEN=bip109
TID=Os.8885.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8885 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) bip109 mRNA for BRI1-KD interacting protein 109, complete cds.
PROD=BRI1-KD interacting protein 109
FL= gb:AK061167.1 gb:AK073930.1 gb:AB117996.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4771011/11Charged multivesicular body protein 2a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47610Os.53617.1.S1_at11/1111+28202408..28203600Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47620OsAffx.7443.1.S1_at11/1111+28204625..28205116Zinc finger, C2H2 type family protein
LOC_Os11g47630Os.51307.1.S1_at11/1111+28208091..28208934Zinc finger, C2H2 type family protein, expressed
LOC_Os11g47640OsAffx.19426.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640Os.52655.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640OsAffx.14237.1.S1_at1/1111+28211601..28215464expressed protein
LOC_Os11g47650Os.9833.1.S1_at11/1111+28216432..28219984expressed protein
LOC_Os11g47650Os.54085.1.S1_at3/1111+28216432..28219984expressed protein
LOC_Os11g47660OsAffx.19427.1.S1_at11/1111+28221817..28222928hypothetical protein
LOC_Os11g47660Os.24409.1.S1_at1/1111+28221817..28222928hypothetical protein
LOC_Os11g47670Os.55400.2.S1_at11/1111+28223321..28224191Thaumatin family protein, expressed
LOC_Os11g47680OsAffx.19428.1.S1_s_at11/1111+28225195..28225949Thaumatin family protein, expressed
LOC_Os11g47690OsAffx.19429.1.S1_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47690OsAffx.19429.1.S1_x_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47700OsAffx.19430.1.S1_at11/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47700OsAffx.19429.1.S1_x_at1/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47710Os.8885.1.S1_at11/1111+28228023..28230234Charged multivesicular body protein 2a, putative, expressed
LOC_Os11g47730Os.8604.1.S1_a_at11/1111+28235028..28236831expressed protein
LOC_Os11g47740OsAffx.31527.1.S1_at11/1111+28242676..28243729hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_x_at11/1111+28244398..28245655hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_at9/1111+28244398..28245655hypothetical protein
LOC_Os11g47760Os.57477.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47760Os.14.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47770OsAffx.31529.1.S1_at9/1111+28251466..28253263selT/selW/selH selenoprotein domain containing protein, expressed
LOC_Os11g47780OsAffx.7445.1.S1_at11/1111+28254030..28257720NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8885.1.S1_at--275--2851Chr11:28228973..28228997 (25 bp)
AAGTCCCAGCTACAGGGTGTATCTC
LOC_Os11g47710
Os.8885.1.S1_at--728--7711Chr11:28228962..28228983 (22 bp)
GGGTGTATCTCTTCGAATTCAGACA
LOC_Os11g47710
Os.8885.1.S1_at--178--31Chr11:28228760..28228784 (25 bp)
ATTGAAATCGACACAAGCTATGGGT
LOC_Os11g47710
Os.8885.1.S1_at--935--8871Chr11:28228736..28228760 (25 bp)
TGAGGCCATGAAGGGTGTCACAAAA
LOC_Os11g47710
Os.8885.1.S1_at--156--6331Chr11:28228688..28228712 (25 bp)
GATGAATCTACCAGCTCTGCAGAAG
LOC_Os11g47710
Os.8885.1.S1_at--676--5271Chr11:28228607..28228631 (25 bp)
GAATGATGCCATTGACGATGCTTTG
LOC_Os11g47710
Os.8885.1.S1_at--996--3471Chr11:28228268..28228292 (25 bp)
CAGGCCCGGCTTGATAATCTGAGGA
LOC_Os11g47710
Os.8885.1.S1_at--1142--1911Chr11:28228207..28228231 (25 bp)
ACGGTGTCATTGTACAATCAGCATA
LOC_Os11g47710
Os.8885.1.S1_at--98--3591Chr11:28228165..28228189 (25 bp)
CATTTTTCTTAGATTGTTGGGCACA
LOC_Os11g47710
Os.8885.1.S1_at--492--6631Chr11:28228150..28228174 (25 bp)
GTTGGGCACATAACTGCAGGCTTCG
LOC_Os11g47710
Os.8885.1.S1_at--973--9791Chr11:28228140..28228164 (25 bp)
TAACTGCAGGCTTCGATTTTCTAGC
LOC_Os11g47710
Target Sequence 
AAGTCCCAGCTACAGGGTGTATCTCTTCGAATTCAGACATTGAAATCGACACAAGCTATGGGTGAGGCCATGAAGGGTGT
CACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGCGGGAGTTTGAGATACAAA
ACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAA
ACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGC
TGTTGCTGCACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGNTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACG
ACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTA
CAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis