Browse Element(s) Details


OsAffx.31528.1.S1_at

Description tigr:9639.m02271
TID=OsAffx.31528.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g255309/11hypothetical protein
LOC_Os11g477509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25510Os.56220.1.S1_at11/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25510OsAffx.4190.1.S1_x_at2/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25510OsAffx.26628.1.S1_x_at1/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25520Os.35344.18.S1_x_at9/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25520Os.35344.3.S1_x_at8/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25520OsAffx.22940.5.S1_x_at3/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25530OsAffx.31528.1.S1_x_at11/1111+14051002..14052284hypothetical protein
LOC_Os11g25530OsAffx.31528.1.S1_at9/1111+14051002..14052284hypothetical protein
LOC_Os11g25540NANA11+14054874..14055410hypothetical protein
LOC_Os11g25550OsAffx.31133.1.S1_at11/1111+14061558..14062619hypothetical protein
LOC_Os11g25560OsAffx.31130.1.S1_at10/1111+14068785..14071018expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31528.1.S1_at--31--6232Chr11:14051242..14051266 (25 bp)
GAGGCCGTCCTCATCGTAGCAAGGA
LOC_Os11g25530
OsAffx.31528.1.S1_at--66--892Chr11:14051243..14051267 (25 bp)
AGGCCGTCCTCATCGTAGCAAGGAG
LOC_Os11g25530
OsAffx.31528.1.S1_at--949--8412Chr11:14051244..14051268 (25 bp)
GGCCGTCCTCATCGTAGCAAGGAGT
LOC_Os11g25530
OsAffx.31528.1.S1_at--1012--4492Chr11:14051245..14051269 (25 bp)
GCCGTCCTCATCGTAGCAAGGAGTG
LOC_Os11g25530
OsAffx.31528.1.S1_at--84--4252Chr11:14051246..14051270 (25 bp)
CCGTCCTCATCGTAGCAAGGAGTGA
LOC_Os11g25530
OsAffx.31528.1.S1_at--867--3992Chr11:14051247..14051271 (25 bp)
CGTCCTCATCGTAGCAAGGAGTGAC
LOC_Os11g25530
OsAffx.31528.1.S1_at--253--512Chr11:14051383..14051407 (25 bp)
ATCGAGGCACCGTTGAAGAGGAAGG
LOC_Os11g25530
OsAffx.31528.1.S1_at--188--9392Chr11:14051384..14051408 (25 bp)
TCGAGGCACCGTTGAAGAGGAAGGA
LOC_Os11g25530
OsAffx.31528.1.S1_at--17--4072Chr11:14051385..14051409 (25 bp)
CGAGGCACCGTTGAAGAGGAAGGAG
LOC_Os11g25530
Target Sequence 
GAGGCCGTCCTCATCGTAGCAAGGAGTGACNATAGCTCCCGTCNTCATCCTCCTTCCGCCGCCGCATTCGTCGNCTTCCC
CCACGGCGGCGCGCNNGCCCGGAGGGTGGTGCGGCCGGCGACGGCGGCTCCCGAGGAGGCCATCGAGGCACCGTTGAAGA
GGAAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis