Browse Element(s) Details


OsAffx.31133.1.S1_at

Description tigr:9639.m02273
TID=OsAffx.31133.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2555011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25520Os.35344.18.S1_x_at9/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25520Os.35344.3.S1_x_at8/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25520OsAffx.22940.5.S1_x_at3/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25530OsAffx.31528.1.S1_x_at11/1111+14051002..14052284hypothetical protein
LOC_Os11g25530OsAffx.31528.1.S1_at9/1111+14051002..14052284hypothetical protein
LOC_Os11g25540NANA11+14054874..14055410hypothetical protein
LOC_Os11g25550OsAffx.31133.1.S1_at11/1111+14061558..14062619hypothetical protein
LOC_Os11g25560OsAffx.31130.1.S1_at10/1111+14068785..14071018expressed protein
LOC_Os11g25570OsAffx.31131.1.S1_at11/1111+14084854..14085562hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31133.1.S1_at--536--5551Chr11:14062507..14062531 (25 bp)
GAAACGATGTGCATGTATCAGCTTA
LOC_Os11g25550
OsAffx.31133.1.S1_at--266--3511Chr11:14062496..14062520 (25 bp)
CATGTATCAGCTTATCCAAGTGAGA
LOC_Os11g25550
OsAffx.31133.1.S1_at--759--6891Chr11:14062493..14062517 (25 bp)
GTATCAGCTTATCCAAGTGAGAGCA
LOC_Os11g25550
OsAffx.31133.1.S1_at--326--1311Chr11:14062474..14062498 (25 bp)
AGAGCAAGAGACTGTATCGGCTTAC
LOC_Os11g25550
OsAffx.31133.1.S1_at--1140--5711Chr11:14062465..14062489 (25 bp)
GACTGTATCGGCTTACACTACTAGA
LOC_Os11g25550
OsAffx.31133.1.S1_at--878--6852Chr02:25309085..25309104 (20 bp)
GTATCGGCTTACACTACTAGAAAAA
NONE
OsAffx.31133.1.S1_at--707--2431Chr11:14062350..14062464 (25 bp)
AAAATCATACATGCGTACAACTACT
LOC_Os11g25550
OsAffx.31133.1.S1_at--927--5971Chr11:14062310..14062334 (25 bp)
GAGAAACAGACACGAACAAGGGAGA
LOC_Os11g25550
OsAffx.31133.1.S1_at--343--2991Chr11:14061954..14061978 (25 bp)
AATGTCCAGAGCGATTTGTGTCACT
LOC_Os11g25550
OsAffx.31133.1.S1_at--414--7271Chr11:14061951..14061975 (25 bp)
GTCCAGAGCGATTTGTGTCACTTCA
LOC_Os11g25550
OsAffx.31133.1.S1_at--1051--3411Chr11:14061948..14061972 (25 bp)
CAGAGCGATTTGTGTCACTTCATCC
LOC_Os11g25550
Target Sequence 
GAAACGATGTGCATGTATCAGCTTATCCAAGTGAGAGCAAGAGACTGTATCGGCTTACACTACTAGAAAAATCATACATG
CGTACAACTACTACAAGTTCAAGGGTGGAGAAACAGACACGAACAAGGGAGAAGCTGCTAGTACATACATATTGGCCGTG
TCACAAGCAACCTAGAGGCACTGTCCTCTGCGGGTATTACGCGTGCGAATTCCTCACGGTTAATGGGAGGTACAGGGTTA
ACGCAGAGGATTTGCCAAGAATAGAATTTCGAACAAGCTTTGACGATACAGGCATCACAAATGTCCAGAGCGATTTGTGT
CACTTCATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis