Browse Element(s) Details


OsAffx.31130.1.S1_at

Description tigr:9639.m02300
TID=OsAffx.31130.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=bHLH transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2556010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25530OsAffx.31528.1.S1_x_at11/1111+14051002..14052284hypothetical protein
LOC_Os11g25530OsAffx.31528.1.S1_at9/1111+14051002..14052284hypothetical protein
LOC_Os11g25540NANA11+14054874..14055410hypothetical protein
LOC_Os11g25550OsAffx.31133.1.S1_at11/1111+14061558..14062619hypothetical protein
LOC_Os11g25560OsAffx.31130.1.S1_at10/1111+14068785..14071018expressed protein
LOC_Os11g25570OsAffx.31131.1.S1_at11/1111+14084854..14085562hypothetical protein
LOC_Os11g25590OsAffx.22947.1.S1_x_at7/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.3.S1_x_at5/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.5.S1_x_at4/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.2.S1_x_at4/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.5.S1_at3/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31130.1.S1_at--271--3151Chr11:14069871..14069895 (25 bp)
AATTCTCGCGTTTGCTGACGCCATT
LOC_Os11g25560
OsAffx.31130.1.S1_at--832--9391Chr11:14069779..14069803 (25 bp)
TCGTTCCTGGCTGCAACAAGGTGGC
LOC_Os11g25560
OsAffx.31130.1.S1_at--497--2251Chr11:14069677..14069754 (25 bp)
AAATTTCACGCTGGTGACAGGCAAG
LOC_Os11g25560
OsAffx.31130.1.S1_at--954--5151Chr11:14069512..14069635 (25 bp)
GCAACGGCAAGTGGAGTTCCTATCA
LOC_Os11g25560
OsAffx.31130.1.S1_at--957--9231Chr11:14069495..14069519 (25 bp)
TCCTATCAATGAAGCTTTCCACCGT
LOC_Os11g25560
OsAffx.31130.1.S1_at--193--4131Chr11:14069465..14069489 (25 bp)
CGCAGCTGGATTTCGACGTCGACAA
LOC_Os11g25560
OsAffx.31130.1.S1_at--777--1291Chr11:14069328..14069348 (21 bp)
AGATGCTAGTGATCCCATCATGCCC
LOC_Os11g25560
OsAffx.31130.1.S1_at--77--9951Chr11:14069231..14069255 (25 bp)
TACGCGTCGTCGCAAGGGACAGCAA
LOC_Os11g25560
OsAffx.31130.1.S1_at--87--5551Chr11:14069174..14069198 (25 bp)
GAAACGGCGCCAACATTTGCAAACC
LOC_Os11g25560
OsAffx.31130.1.S1_at--886--9311Chr11:14069133..14069157 (25 bp)
TCCCTCACTTGATGGGTTTCACAGT
LOC_Os11g25560
OsAffx.31130.1.S1_at--636--6831NONE
GTTTCACAGTGCTCATTCTCAGGCA
NONE
Target Sequence 
AATTCTCGCGTTTGCTGACGCCATTGCCGCCGTTTTTCACCTCCAGGTGAGGAGAGAAAAGATCAGCGAGCGCATGAAGC
TGCTTCAAGACCTCGTTCCTGGCTGCAACAAGGTGGCAAAATTCAGCCAAAAAATAAATTTAAATTTCACGCTGGTGACA
GGCAAGGCAGTGATGCTTGACGAGATCATAAACTACGTCCAGTCGTTGCAACGGCAAGTGGAGTTCCTATCAATGAAGCT
TTCCACCGTCAACCCGCAGCTGGATTTCGACGTCGACAACTTCATCCCAAAAGATGCTAGTGATCCCATCATGCCCGCGC
CGTTGTCGCTGCCACCGCCACCGCCACCGCTATCCTACTCACCGGAGGGCGCAAGCCCGGGGATCTGCTACGCGTCGTCG
CAAGGGACAGCAATGCAGAGCGTGGTGACAAGCACCAAACACTTAGAAACGGCGCCAACATTTGCAAACCACCATGTCAT
CCCAGTTCCCTCACTTGATGGGTTTCACAGTGCTCATTCTCAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis