Browse Element(s) Details


OsAffx.4190.1.S1_x_at

Description tigr:9632.m05466
TID=OsAffx.4190.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5612011/11Protein kinase domain containing protein, expressed
LOC_Os11g255102/11Protein kinase domain containing protein, expressed
LOC_Os06g389901/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56070Os.2223.1.S1_at11/114+33175418..33178905COP9 signalosome complex subunit 5b, putative, expressed
LOC_Os04g56080OsAffx.26627.1.S1_x_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56080OsAffx.26627.1.S1_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56090OsAffx.26627.1.S1_x_at2/114+33188294..33190738D-mannose binding lectin family protein
LOC_Os04g56100Os.11191.1.S1_at11/114+33196249..33197036expressed protein
LOC_Os04g56110Os.28305.1.S1_at11/114+33199570..33202132Protein kinase domain containing protein, expressed
LOC_Os04g56120OsAffx.4190.1.S1_x_at11/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56120Os.56111.1.S1_at9/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56120OsAffx.29815.1.S1_x_at1/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56130OsAffx.26628.1.S1_at11/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56130OsAffx.26628.1.S1_x_at11/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56130OsAffx.29815.1.S1_x_at1/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56140Os.17447.1.S1_at11/114+33210026..33217145expressed protein
LOC_Os04g56150NANA4+33218121..33218690ethylene response factor 1, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009621biological_processresponse to pathogenic fungi
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4190.1.S1_x_at--1011--1431Chr04:33203420..33203444 (25 bp)
AGAACGTGCTCCTCGGCGCCGGGAT
LOC_Os04g56120
OsAffx.4190.1.S1_x_at--689--7991Chr04:33203399..33203423 (25 bp)
GGATGGCGCCCAAGGTGTCCGACTT
LOC_Os04g56120
OsAffx.4190.1.S1_x_at--691--1611Chr04:33203363..33203387 (25 bp)
AGCTGTGCGACAGGGAGGACACCCA
LOC_Os04g56120
OsAffx.4190.1.S1_x_at--1074--1051Chr04:33203352..33203376 (25 bp)
AGGGAGGACACCCACCTGACCATCA
LOC_Os04g56120
OsAffx.4190.1.S1_x_at--313--8671Chr04:33203288..33203312 (25 bp)
TGTGGATGCCGCTCCCCGTGACGCA
LOC_Os04g56120
OsAffx.4190.1.S1_x_at--477--5133Chr11:14026399..14026423 (25 bp)
GCACAAGTGCGACGTGTACAGCTAC
LOC_Os11g25510
OsAffx.4190.1.S1_x_at--817--1911Chr04:33203243..33203267 (25 bp)
ACGGGATGCTGCTGTTCGAGATGCT
LOC_Os04g56120
OsAffx.4190.1.S1_x_at--45--631Chr04:33203238..33203262 (25 bp)
ATGCTGCTGTTCGAGATGCTCGGGA
LOC_Os04g56120
OsAffx.4190.1.S1_x_at--824--7492Chr11:14026607..14026630 (24 bp)
GTGGTGCGTGCAGTACAGGCCGGAG
LOC_Os11g25510
OsAffx.4190.1.S1_x_at--847--5651Chr04:33202998..33203022 (25 bp)
GACAGGCCGTCCATGGGCAACGTCG
LOC_Os04g56120
OsAffx.4190.1.S1_x_at--800--4331Chr04:33202988..33203012 (25 bp)
CCATGGGCAACGTCGTGCGGATGCT
LOC_Os04g56120
Target Sequence 
AGAACGTGCTCCTCGGCGCCGGGATGGCGCCCAAGGTGTCCGACTTCGGGCTCGCCAAGCTGTGCGACAGGGAGGACACC
CACCTGACCATCACCGGCGCGCGCGGCACCCCGGGGTACGCGGCGCCGGAGCTGTGGATGCCGCTCCCCGTGACGCACAA
GTGCGACGTGTACAGCTACGGGATGCTGCTGTTCGAGATGCTCGGGAGGCGGCGGAACCTGGAGCTCGGCGCCGGGGCCG
GCGCGCACGGGCACGGCAGCCAGGAGTGGTACCCGCGGTGGGTGTGGCACCGGTTCGAGGCCGGCGAGACGGAGGCCGTG
CTGGCGCGCGCGACGGCGGCGGCGGCGGGCGGCGGGAGGGAGAGGGAGAAGGCGGAGAGGGTGTGCATGGTGGCACTGTG
GTGCGTGCAGTACAGGCCGGAGGACAGGCCGTCCATGGGCAACGTCGTGCGGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4190.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis