Browse Element(s) Details


Os.2223.1.S1_at

Description gb:AB055495.1
DB_XREF= gi:17025925
GEN=Jab1
TID=Os.2223.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2223 (NCBI UniGene Cluster)
DEF=Oryza sativa Jab1 mRNA for JUN-activation-domain-binding protein homolog, complete cds.
PROD=JUN-activation-domain-binding protein homolog
FL= gb:AF072849.1 gb:AK099088.1 gb:AK062107.1 gb:AB055495.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5607011/11COP9 signalosome complex subunit 5b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56030Os.55343.1.S1_at11/114+33155284..33156145expressed protein
LOC_Os04g56040OsAffx.26624.1.S1_at11/114+33158271..33159338Glycine rich protein family protein, expressed
LOC_Os04g56050OsAffx.4189.1.S1_at11/114+33159721..33161165hypothetical protein
LOC_Os04g56060OsAffx.26625.1.S1_at9/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56060Os.5753.1.S1_x_at9/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56060Os.5753.1.S1_at7/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56070Os.2223.1.S1_at11/114+33175418..33178905COP9 signalosome complex subunit 5b, putative, expressed
LOC_Os04g56080OsAffx.26627.1.S1_x_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56080OsAffx.26627.1.S1_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56090OsAffx.26627.1.S1_x_at2/114+33188294..33190738D-mannose binding lectin family protein
LOC_Os04g56100Os.11191.1.S1_at11/114+33196249..33197036expressed protein
LOC_Os04g56110Os.28305.1.S1_at11/114+33199570..33202132Protein kinase domain containing protein, expressed
LOC_Os04g56120OsAffx.4190.1.S1_x_at11/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56120Os.56111.1.S1_at9/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56120OsAffx.29815.1.S1_x_at1/114+33202484..33204235Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000338biological_processprotein deneddylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009640biological_processphotomorphogenesis
GO:0010093biological_processspecification of floral organ identity
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2223.1.S1_at--737--8571Chr04:33177129..33177153 (25 bp)
TGGATTCTCATCTCCTTGATCTACT
LOC_Os04g56070
Os.2223.1.S1_at--1074--7071Chr04:33177170..33177194 (25 bp)
GTCAATACGTTATCTTCATCACCTC
LOC_Os04g56070
Os.2223.1.S1_at--189--3251Chr04:33177357..33177381 (25 bp)
CAAGCTGAGGGTCAACTGGCACACA
LOC_Os04g56070
Os.2223.1.S1_at--251--4991Chr04:33177391..33177415 (25 bp)
GCATGCTTATGCCATCGCAACGAAA
LOC_Os04g56070
Os.2223.1.S1_at--914--7151Chr04:33178280..33178304 (25 bp)
GTCTCCACTGGCTAAGGTAACTCGG
LOC_Os04g56070
Os.2223.1.S1_at--515--1971Chr04:33178320..33178344 (25 bp)
ACTGCTGAACAGGTCCATGGTCTCA
LOC_Os04g56070
Os.2223.1.S1_at--697--3491Chr04:33178335..33178420 (25 bp)
CATGGTCTCATGTCACAGGTCATTA
LOC_Os04g56070
Os.2223.1.S1_at--303--5191Chr04:33178559..33178583 (25 bp)
GAATTCCTTCATTAGTTAGCCTTTT
LOC_Os04g56070
Os.2223.1.S1_at--293--6351Chr04:33178587..33178611 (25 bp)
GATGCTGGATTCACATACACTGGGT
LOC_Os04g56070
Os.2223.1.S1_at--694--1951Chr04:33178605..33178629 (25 bp)
ACTGGGTGCCTAGTTGTTTCATGAC
LOC_Os04g56070
Os.2223.1.S1_at--303--8711Chr04:33178639..33178663 (25 bp)
TGTCCAGCATAACTACCCGATTCAA
LOC_Os04g56070
Target Sequence 
TGGATTCTCATCTCCTTGATCTACTTTGGAATAAGTACTGGGTCAATACGTTATCTTCATCACCTCTCCTGGGCAACAGG
GATTATGTTGCTGGCCAGATATTTGATTTAGCTGATAAACTAGAGCAAGCTGAGGGTCAACTGGCACACAGTCGATATGG
CATGCTTATGCCATCGCAACGAAAGAAAGAGCAAGAGGAGTCTCCACTGGCTAAGGTAACTCGGGATAGCTCAAAAATTA
CTGCTGAACAGGTCCATGGTCTCATGTCACAGGTCATTAAGGATATCCTCTTCAACTCTGTGCACCCGTCAAACAAGGCA
AGCACAAGCGCACCAGATTCATCCGGGCCTGAGCCTATGGTTGAAGCATGAGTGTTCTACAGAATTCCTTCATTAGTTAG
CCTTTTGTTGATGCTGGATTCACATACACTGGGTGCCTAGTTGTTTCATGACTAAAAGCTGTGTCCAGCATAACTACCCG
ATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis