Browse Element(s) Details


Os.56111.1.S1_at

Description gb:AK109273.1
DB_XREF= gi:32994482
TID=Os.56111.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-A09, full insert sequence.
FL= gb:AK109273.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g561209/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56070Os.2223.1.S1_at11/114+33175418..33178905COP9 signalosome complex subunit 5b, putative, expressed
LOC_Os04g56080OsAffx.26627.1.S1_x_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56080OsAffx.26627.1.S1_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56090OsAffx.26627.1.S1_x_at2/114+33188294..33190738D-mannose binding lectin family protein
LOC_Os04g56100Os.11191.1.S1_at11/114+33196249..33197036expressed protein
LOC_Os04g56110Os.28305.1.S1_at11/114+33199570..33202132Protein kinase domain containing protein, expressed
LOC_Os04g56120OsAffx.4190.1.S1_x_at11/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56120Os.56111.1.S1_at9/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56120OsAffx.29815.1.S1_x_at1/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56130OsAffx.26628.1.S1_at11/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56130OsAffx.26628.1.S1_x_at11/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56130OsAffx.29815.1.S1_x_at1/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56140Os.17447.1.S1_at11/114+33210026..33217145expressed protein
LOC_Os04g56150NANA4+33218121..33218690ethylene response factor 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56111.1.S1_at--737--9951Chr04:33202840..33202864 (25 bp)
TACCGGCAGGTAGACGTGTCGGAAA
LOC_Os04g56120
Os.56111.1.S1_at--180--10311Chr04:33202804..33202828 (25 bp)
TTTCTGATTCTTCCACGTTTGCACA
LOC_Os04g56120
Os.56111.1.S1_at--589--3411NONE
CAGCACGGGTGTGAGTTGTCAGCTA
NONE
Os.56111.1.S1_at--1051--9651NONE
TCAGCTAGGCTGTTGTGTTCAAAGA
NONE
Os.56111.1.S1_at--565--1391Chr04:33202741..33202765 (25 bp)
AGACGTACACCTACTGATGTGTATA
LOC_Os04g56120
Os.56111.1.S1_at--546--7471Chr04:33202694..33202718 (25 bp)
GTGTGTTAGACTGTTATAGTGCCGT
LOC_Os04g56120
Os.56111.1.S1_at--1087--271Chr04:33202679..33202703 (25 bp)
ATAGTGCCGTATTTGTTCCGCTAAT
LOC_Os04g56120
Os.56111.1.S1_at--785--9751Chr04:33202646..33202670 (25 bp)
TAAACGTTTCGGTGTGACTCAATTC
LOC_Os04g56120
Os.56111.1.S1_at--481--7471Chr04:33202635..33202659 (25 bp)
GTGTGACTCAATTCGACTCTGCAGT
LOC_Os04g56120
Os.56111.1.S1_at--950--4091Chr04:33202622..33202646 (25 bp)
CGACTCTGCAGTCTGTACTCTGTAG
LOC_Os04g56120
Os.56111.1.S1_at--26--4551Chr04:33202572..33202596 (25 bp)
GCCCTGACTGTCATTGGGAGGATCA
LOC_Os04g56120
Target Sequence 
TACCGGCAGGTAGACGTGTCGGAAACGAATTCCCGTTTTCTGATTCTTCCACGTTTGCACAGCACGGGTGTGAGTTGTCA
GCTAGGCTGTTGTGTTCAAAGACGTACACCTACTGATGTGTATAAGTGCATGTCTACAACATTTTAGTGTGTTAGACTGT
TATAGTGCCGTATTTGTTCCGCTAATTTTGGTTTTAAACGTTTCGGTGTGACTCAATTCGACTCTGCAGTCTGTACTCTG
TAGCGAGGAAGATGGGTTAGACATGTGGGCCCTGACTGTCATTGGGAGGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis