Browse Element(s) Details


OsAffx.26628.1.S1_at

Description tigr:9632.m05467
TID=OsAffx.26628.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5613011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56080OsAffx.26627.1.S1_x_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56080OsAffx.26627.1.S1_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56090OsAffx.26627.1.S1_x_at2/114+33188294..33190738D-mannose binding lectin family protein
LOC_Os04g56100Os.11191.1.S1_at11/114+33196249..33197036expressed protein
LOC_Os04g56110Os.28305.1.S1_at11/114+33199570..33202132Protein kinase domain containing protein, expressed
LOC_Os04g56120OsAffx.4190.1.S1_x_at11/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56120Os.56111.1.S1_at9/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56120OsAffx.29815.1.S1_x_at1/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56130OsAffx.26628.1.S1_at11/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56130OsAffx.26628.1.S1_x_at11/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56130OsAffx.29815.1.S1_x_at1/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56140Os.17447.1.S1_at11/114+33210026..33217145expressed protein
LOC_Os04g56150NANA4+33218121..33218690ethylene response factor 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26628.1.S1_at--900--4391Chr04:33208604..33208628 (25 bp)
GCCAAGCTCTGCAGCCGCGACAACA
LOC_Os04g56130
OsAffx.26628.1.S1_at--79--7431Chr04:33208739..33208763 (25 bp)
GTGTTCGAGATCCTCGGGCGGCGGC
LOC_Os04g56130
OsAffx.26628.1.S1_at--1103--1071Chr04:33208800..33208824 (25 bp)
AGTGGTACCCCAGGTGGGCGTGGCA
LOC_Os04g56130
OsAffx.26628.1.S1_at--932--7732Chr04:33208812..33208836 (25 bp)
GGTGGGCGTGGCAGAGGTTCGACCA
LOC_Os04g56130
OsAffx.26628.1.S1_at--348--3411Chr04:33208823..33208847 (25 bp)
CAGAGGTTCGACCAGGGCCGGTTCG
LOC_Os04g56130
OsAffx.26628.1.S1_at--1046--1031Chr04:33208911..33208935 (25 bp)
AGGTGGCGCTCTGGTGCATACAGTA
LOC_Os04g56130
OsAffx.26628.1.S1_at--550--8471Chr04:33208914..33208938 (25 bp)
TGGCGCTCTGGTGCATACAGTACCA
LOC_Os04g56130
OsAffx.26628.1.S1_at--176--8611Chr04:33208922..33208946 (25 bp)
TGGTGCATACAGTACCAGCCGGAGG
LOC_Os04g56130
OsAffx.26628.1.S1_at--1044--4011Chr04:33209008..33209032 (25 bp)
CGTCAACCCGTTCGCGTACATGGCG
LOC_Os04g56130
OsAffx.26628.1.S1_at--771--4031Chr04:33209016..33209040 (25 bp)
CGTTCGCGTACATGGCGACCATGGA
LOC_Os04g56130
OsAffx.26628.1.S1_at--869--8471Chr04:33209028..33209052 (25 bp)
TGGCGACCATGGACGCGATCTCCAG
LOC_Os04g56130
Target Sequence 
GCCAAGCTCTGCAGCCGCGACAACACCCACCTGACGATGACCGGCGCGCGGGGCACGCCGGGGTACGCGGCGCCGGAGCT
GTGGCTGCCGCTGCCGGTGACGCACAAGTGCGACGTGTACAGCTTCGGCATGCTGGTGTTCGAGATCCTCGGGCGGCGGC
GCAACCTCGACACCCAGCGCCCGGCGGAGAGCCAGGAGTGGTACCCCAGGTGGGCGTGGCAGAGGTTCGACCAGGGCCGG
TTCGGCGAGGTCATGGCGGCGTCGGGGATCCGGAGCAAGGACGGCGAGAAGGCGGAGAGGATGTGCAAGGTGGCGCTCTG
GTGCATACAGTACCAGCCGGAGGCGAGGCCGTCGATGAGCAGCGTCGTCAGGATGCTCGAAGGGGAGGAGCAGATCGCGC
GGCCCGTCAACCCGTTCGCGTACATGGCGACCATGGACGCGATCTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis