Browse Element(s) Details


Os.17447.1.S1_at

Description gb:AK101011.1
DB_XREF= gi:32986220
TID=Os.17447.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17447 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023148O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148O14, full insert sequence.
FL= gb:AK101011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5614011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56090OsAffx.26627.1.S1_x_at2/114+33188294..33190738D-mannose binding lectin family protein
LOC_Os04g56100Os.11191.1.S1_at11/114+33196249..33197036expressed protein
LOC_Os04g56110Os.28305.1.S1_at11/114+33199570..33202132Protein kinase domain containing protein, expressed
LOC_Os04g56120OsAffx.4190.1.S1_x_at11/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56120Os.56111.1.S1_at9/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56120OsAffx.29815.1.S1_x_at1/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56130OsAffx.26628.1.S1_at11/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56130OsAffx.26628.1.S1_x_at11/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56130OsAffx.29815.1.S1_x_at1/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56140Os.17447.1.S1_at11/114+33210026..33217145expressed protein
LOC_Os04g56150NANA4+33218121..33218690ethylene response factor 1, putative
LOC_Os04g56160Os.12328.1.S1_at11/114+33238676..33245782Plasma membrane ATPase, putative, expressed
LOC_Os04g56160Os.55700.1.S1_at9/114+33238676..33245782Plasma membrane ATPase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17447.1.S1_at--812--5431Chr04:33216608..33216632 (25 bp)
GAACCTGCGCAGGTAGACCCAAAAC
LOC_Os04g56140
Os.17447.1.S1_at--630--451Chr04:33216701..33216725 (25 bp)
ATCTACTGCACCCACAATTGTTTGT
LOC_Os04g56140
Os.17447.1.S1_at--607--7731Chr04:33216799..33216823 (25 bp)
GGTGGATTTTATCGTGCACCCACTC
LOC_Os04g56140
Os.17447.1.S1_at--677--7131Chr04:33216852..33216876 (25 bp)
GTCATACTGACTACGTTTCACGATT
LOC_Os04g56140
Os.17447.1.S1_at--553--3691Chr04:33216889..33216913 (25 bp)
CTAGGACTGGTAGATGCCTCCTTTT
LOC_Os04g56140
Os.17447.1.S1_at--102--4471Chr04:33216904..33216928 (25 bp)
GCCTCCTTTTTTCTTCTCAGTGTAA
LOC_Os04g56140
Os.17447.1.S1_at--404--2293Chr12:1101483..1101890 (25 bp)
AAATGGCTAGCCATCTAGGTGACTA
NONE
Os.17447.1.S1_at--324--9651Chr04:33217031..33217055 (25 bp)
TCAGTATCATGCAGCGCTGGACGCT
LOC_Os04g56140
Os.17447.1.S1_at--1004--4711Chr04:33217046..33217070 (25 bp)
GCTGGACGCTGAGGATTCTCGACAT
LOC_Os04g56140
Os.17447.1.S1_at--1064--7031Chr04:33217071..33217095 (25 bp)
GTAACCAGTATTTCGTACTACGGAT
LOC_Os04g56140
Os.17447.1.S1_at--669--671Chr04:33217117..33217141 (25 bp)
ATGAACTGCGGCTACGGTTTGCATT
LOC_Os04g56140
Target Sequence 
GAACCTGCGCAGGTAGACCCAAAACCAGCCTACGTTCGGCGAGGACGGAAAAGGGTGGTCCGAGGCACGAGAGGAAGAGC
AAAGTAGAAGAGCATCTACTGCACCCACAATTGTTTGTATACCACTAATATTAACGGCCCAAATGGGTGGTATGATAATG
ATACCTAGGTTAACTAGAGTTAGCATTGATCGGTGGATTTTATCGTGCACCCACTCNTTTGTANCCCATGTTGTATTATT
GTAGGCGTCATACTGACTACGTTTCACGATTTGGATGTGATTACTAGGACTGGTAGATGCCTCCTTTTTTCTTCTCAGTG
TAAAACTTATGAGTAGTTTGTNCAGATGGAAGAACAAATGGTTTGTTTNGTAGTATTGTTGTAGCAGTAAATGGCTAGCC
ATCTAGGTGACTAGAGATGTACTACNTCAGTATCATGCAGCGCTGGACGCTGAGGATTCTCGACATGTAACCAGTATTTC
GTACTACGGATATTCTATTCATTGTGTGGTAAATGAACTGCGGCTACGGTTTGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17447.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis