Browse Element(s) Details


Os.12328.1.S1_at

Description gb:AK073066.1
DB_XREF= gi:32983089
TID=Os.12328.1
CNT=231
FEA=FLmRNA
TIER=FL+Stack
STK=44
UG=Os.12328 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23022 plasma membrane H+-ATPase-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023L01, full insert sequence.
FL= gb:AK073066.1 gb:AK105082.1 gb:AK100435.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5616011/11Plasma membrane ATPase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56140Os.17447.1.S1_at11/114+33210026..33217145expressed protein
LOC_Os04g56150NANA4+33218121..33218690ethylene response factor 1, putative
LOC_Os04g56160Os.12328.1.S1_at11/114+33238676..33245782Plasma membrane ATPase, putative, expressed
LOC_Os04g56160Os.55700.1.S1_at9/114+33238676..33245782Plasma membrane ATPase, putative, expressed
LOC_Os04g56170Os.52576.1.S1_at11/114+33269440..33273790LIGULELESS1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009935biological_processnutrient import
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12328.1.S1_at--823--10511Chr04:33245039..33245063 (25 bp)
TTCACGGCCTTCAGCCACCGGAGGT
LOC_Os04g56160
Os.12328.1.S1_at--324--2591Chr04:33245083..33245107 (25 bp)
AACGACAAGAGCAGCTACCGCGAGC
LOC_Os04g56160
Os.12328.1.S1_at--906--4611Chr04:33245102..33245126 (25 bp)
GCGAGCTCTCTGAGATCGCTGAGCA
LOC_Os04g56160
Os.12328.1.S1_at--145--6391Chr04:33245115..33245139 (25 bp)
GATCGCTGAGCAAGCCAAGAGACGA
LOC_Os04g56160
Os.12328.1.S1_at--395--4051Chr04:33245287..33245309 (23 bp)
CGAGGCTGAGAGAGCTGAACACTCT
LOC_Os04g56160
Os.12328.1.S1_at--483--10731Chr04:33245437..33245461 (25 bp)
TTGCAAACGGCGCTCTGGTTAAAGG
LOC_Os04g56160
Os.12328.1.S1_at--206--3871Chr04:33245508..33245532 (25 bp)
CTGATCTGAACAGCCCTAGTTGTAA
LOC_Os04g56160
Os.12328.1.S1_at--642--1651Chr04:33245519..33245543 (25 bp)
AGCCCTAGTTGTAAAGTGCTACCAA
LOC_Os04g56160
Os.12328.1.S1_at--682--3291Chr04:33245541..33245565 (25 bp)
CAAATATATGGTCCGGTTTCCCTCT
LOC_Os04g56160
Os.12328.1.S1_at--310--9271Chr04:33245552..33245576 (25 bp)
TCCGGTTTCCCTCTTCTAGAGAGGT
LOC_Os04g56160
Os.12328.1.S1_at--661--6711Chr04:33245582..33245606 (25 bp)
GTTCTAGTGGAGTACCGTACGTACG
LOC_Os04g56160
Target Sequence 
TTCACGGCCTTCAGCCACCGGAGGTCGCCTCCAACACGCTCTTCAACGACAAGAGCAGCTACCGCGAGCTCTCTGAGATC
GCTGAGCAAGCCAAGAGACGAGCTGAGATCGCGAGGCTGAGAGAGCTGAACACTCTCAAGGGCCACGTCGAATCGGTGGT
GAAGCTGAAGGGGCTGGACATCGACACGATCCAGCAGAACTACACAGTGTGAGGAACCCCCTCGGCATTCAACGAGAGAT
CGTCATCAGCGCTGGAGCGGGAATTGCAAACGGCGCTCTGGTTAAAGGAAATTTTCGATGAATGATTGGAAGAACAAAAA
ACAAAAAAACATGGCTGATCTGAACAGCCCTAGTTGTAAAGTGCTACCAAATATATGGTCCGGTTTCCCTCTTCTAGAGA
GGTTTTACGTTCTAGTGGAGTACCGTACGTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis