Browse Element(s) Details


Os.52576.1.S1_at

Description gb:AK068104.1
DB_XREF= gi:32978122
TID=Os.52576.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52576 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129G14, full insert sequence.
FL= gb:AK068104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5617011/11LIGULELESS1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56160Os.12328.1.S1_at11/114+33238676..33245782Plasma membrane ATPase, putative, expressed
LOC_Os04g56160Os.55700.1.S1_at9/114+33238676..33245782Plasma membrane ATPase, putative, expressed
LOC_Os04g56170Os.52576.1.S1_at11/114+33269440..33273790LIGULELESS1 protein, putative, expressed
LOC_Os04g56180Os.57372.1.S1_at11/114+33281042..33287010Peroxidase 45 precursor, putative, expressed
LOC_Os04g56180Os.50838.1.A1_at6/114+33281042..33287010Peroxidase 45 precursor, putative, expressed
LOC_Os04g56190OsAffx.14433.1.S1_at11/114+33292622..33293447hypothetical protein
LOC_Os04g56200OsAffx.26629.1.S1_at11/114+33296749..33297386hypothetical protein
LOC_Os04g56210Os.25054.1.S1_at11/114+33298158..33300981Farnesyl pyrophosphate synthetase 1, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009554biological_processmegasporogenesis
GO:0009556biological_processmicrosporogenesis
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52576.1.S1_at--758--9071Chr04:33273211..33273235 (25 bp)
TGCTTATTCCCTCAGAGCCAAGGAG
LOC_Os04g56170
Os.52576.1.S1_at--29--7351Chr04:33273271..33273295 (25 bp)
GTGCAAGAACCAAGCTTAGCCTTCC
LOC_Os04g56170
Os.52576.1.S1_at--193--2511Chr04:33273319..33273343 (25 bp)
AACATCCTTCAGCTTGGACAGGCGA
LOC_Os04g56170
Os.52576.1.S1_at--1055--8131Chr04:33273334..33273358 (25 bp)
GGACAGGCGATGTTTGATCTCGACT
LOC_Os04g56170
Os.52576.1.S1_at--864--7471Chr04:33273476..33273500 (25 bp)
GTGTGTGTACGTCCAGACATCTCTT
LOC_Os04g56170
Os.52576.1.S1_at--964--2091Chr04:33273492..33273516 (25 bp)
ACATCTCTTTTCATCTTGTCTCTAT
LOC_Os04g56170
Os.52576.1.S1_at--1065--4631Chr04:33273554..33273578 (25 bp)
GCGTTATTGTCATGTGTACTGGCAG
LOC_Os04g56170
Os.52576.1.S1_at--283--1951Chr04:33273571..33273595 (25 bp)
ACTGGCAGTTTTCCTCGTTGGAGAA
LOC_Os04g56170
Os.52576.1.S1_at--731--2671Chr04:33273594..33273618 (25 bp)
AAGCTGGTTAATTAGCCGGTACATC
LOC_Os04g56170
Os.52576.1.S1_at--277--9811Chr04:33273720..33273744 (25 bp)
TAACTACCTGAATTTTTCGTGCAAT
LOC_Os04g56170
Os.52576.1.S1_at--562--7351Chr04:33273738..33273762 (25 bp)
GTGCAATTGCACATGGCTAGATATT
LOC_Os04g56170
Target Sequence 
TGCTTATTCCCTCAGAGCCAAGGAGCTGTCTCGAGCACTGACACATCAAATATAGCTCAAGTGCAAGAACCAAGCTTAGC
CTTCCATCAGCAGCATCACCAACACAGCAACATCCTTCAGCTTGGACAGGCGATGTTTGATCTCGACTTCGATCACTAGT
ATAATTAATATTTATCAATCATCTCGATCTCTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCCCTCGTACGTGTGTGTACGTCCAGACATCTCTTTTCATCTTGTCTCTATTAATTACTGTAATT
TGGATATAATAATGATAGCTTATGCGTTATTGTCATGTGTACTGGCAGTTTTCCTCGTTGGAGAAGCTGGTTAATTAGCC
GGTACATCAAATTTAGTGNAATTTATAGTTTGGTGCCACAAGAGGCTAGTTGGTCAATTAATTTCATCTAGGAAGAATGC
ACCACATGAAAGTTGTACGAATTTCTACATAACTACCTGAATTTTTCGTGCAATTGCACATGGCTAGATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis