Browse Element(s) Details


OsAffx.26629.1.S1_at

Description tigr:9632.m05475
TID=OsAffx.26629.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5620011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56170Os.52576.1.S1_at11/114+33269440..33273790LIGULELESS1 protein, putative, expressed
LOC_Os04g56180Os.57372.1.S1_at11/114+33281042..33287010Peroxidase 45 precursor, putative, expressed
LOC_Os04g56180Os.50838.1.A1_at6/114+33281042..33287010Peroxidase 45 precursor, putative, expressed
LOC_Os04g56190OsAffx.14433.1.S1_at11/114+33292622..33293447hypothetical protein
LOC_Os04g56200OsAffx.26629.1.S1_at11/114+33296749..33297386hypothetical protein
LOC_Os04g56210Os.25054.1.S1_at11/114+33298158..33300981Farnesyl pyrophosphate synthetase 1, mitochondrial precursor, putative, expressed
LOC_Os04g56220OsAffx.26630.1.S1_at10/114+33302307..33303570hypothetical protein
LOC_Os04g56220OsAffx.22651.3.A1_x_at1/114+33302307..33303570hypothetical protein
LOC_Os04g56230Os.22651.1.S1_at10/114+33305663..33309387Farnesyl pyrophosphate synthetase 2, putative, expressed
LOC_Os04g56240Os.7665.1.S1_at11/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56240Os.57060.1.S1_at1/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56250Os.49955.1.A1_at11/114+33315321..33316613F-box domain containing protein, expressed
LOC_Os04g56260OsAffx.22848.3.S1_x_at3/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_x_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26629.1.S1_at--411--10651Chr04:33297325..33297349 (25 bp)
TTGCGTCGCATAGCACCCGGAAGTA
LOC_Os04g56200
OsAffx.26629.1.S1_at--1066--3991Chr04:33297322..33297346 (25 bp)
CGTCGCATAGCACCCGGAAGTACAG
LOC_Os04g56200
OsAffx.26629.1.S1_at--861--10011Chr04:33297315..33297339 (25 bp)
TAGCACCCGGAAGTACAGCACCGTA
LOC_Os04g56200
OsAffx.26629.1.S1_at--813--8191Chr04:33297307..33297331 (25 bp)
GGAAGTACAGCACCGTAGCAAGCCA
LOC_Os04g56200
OsAffx.26629.1.S1_at--60--1171Chr04:33297304..33297328 (25 bp)
AGTACAGCACCGTAGCAAGCCAAAG
LOC_Os04g56200
OsAffx.26629.1.S1_at--253--1511Chr04:33297299..33297323 (25 bp)
AGCACCGTAGCAAGCCAAAGCCAGG
LOC_Os04g56200
OsAffx.26629.1.S1_at--1064--9991Chr04:33297008..33297316 (25 bp)
TAGCAAGCCAAAGCCAGGGAGGGAA
LOC_Os04g56200
OsAffx.26629.1.S1_at--584--2631Chr04:33297004..33297312 (25 bp)
AAGCCAAAGCCAGGGAGGGAAAGAT
LOC_Os04g56200
OsAffx.26629.1.S1_at--356--371Chr04:33296981..33297005 (25 bp)
ATAATTGGAGATTTGCTGAGAAGCA
LOC_Os04g56200
OsAffx.26629.1.S1_at--563--8551Chr04:33296976..33297000 (25 bp)
TGGAGATTTGCTGAGAAGCAGCGAT
LOC_Os04g56200
OsAffx.26629.1.S1_at--562--5051Chr04:33296959..33296983 (25 bp)
GCAGCGATGGCGGAATTTGGGTATT
LOC_Os04g56200
Target Sequence 
TTGCGTCGCATAGCACCCGGAAGTACAGCACCGTAGCAAGCCAAAGCCAGGGAGGGAAAGATAATTGGAGATTTGCTGAG
AAGCAGCGATGGCGGAATTTGGGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis