Browse Element(s) Details


Os.49955.1.A1_at

Description gb:AK119428.1
DB_XREF= gi:37989051
TID=Os.49955.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H12, full insert sequence.
FL= gb:AK119428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5625011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56190OsAffx.14433.1.S1_at11/114+33292622..33293447hypothetical protein
LOC_Os04g56200OsAffx.26629.1.S1_at11/114+33296749..33297386hypothetical protein
LOC_Os04g56210Os.25054.1.S1_at11/114+33298158..33300981Farnesyl pyrophosphate synthetase 1, mitochondrial precursor, putative, expressed
LOC_Os04g56220OsAffx.26630.1.S1_at10/114+33302307..33303570hypothetical protein
LOC_Os04g56220OsAffx.22651.3.A1_x_at1/114+33302307..33303570hypothetical protein
LOC_Os04g56230Os.22651.1.S1_at10/114+33305663..33309387Farnesyl pyrophosphate synthetase 2, putative, expressed
LOC_Os04g56240Os.7665.1.S1_at11/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56240Os.57060.1.S1_at1/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56250Os.49955.1.A1_at11/114+33315321..33316613F-box domain containing protein, expressed
LOC_Os04g56260OsAffx.22848.3.S1_x_at3/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_x_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56280OsAffx.4192.1.S1_at11/114+33332642..33333798hypothetical protein
LOC_Os04g56284Os.50886.1.S1_at10/114+33335765..33336297expressed protein
LOC_Os04g56290Os.9181.1.S1_x_at11/114+33338235..33344907Possible apospory-associated protein C, putative, expressed
LOC_Os04g56290Os.35113.1.S1_at11/114+33338235..33344907Possible apospory-associated protein C, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49955.1.A1_at--880--6911Chr04:33315884..33315908 (25 bp)
GTATGATCCGTGCAACCACGATGAT
LOC_Os04g56250
Os.49955.1.A1_at--911--4991Chr04:33315818..33315842 (25 bp)
GCATGATCGCGTTGACAGCTACCTG
LOC_Os04g56250
Os.49955.1.A1_at--668--1571Chr04:33315802..33315826 (25 bp)
AGCTACCTGTTCGAGTCTGATCAAG
LOC_Os04g56250
Os.49955.1.A1_at--171--4851Chr04:33315753..33315777 (25 bp)
GCTACACTGGTACGCCTGTCCATGT
LOC_Os04g56250
Os.49955.1.A1_at--1080--3851Chr04:33315738..33315762 (25 bp)
CTGTCCATGTCCTCAAACTCAATGA
LOC_Os04g56250
Os.49955.1.A1_at--626--8511Chr04:33315677..33315701 (25 bp)
TGGACGGGCATTGTTCACCGGAACA
LOC_Os04g56250
Os.49955.1.A1_at--241--2651Chr04:33315632..33315656 (25 bp)
AACCAAGCTTAAGTCGATGCAGAAC
LOC_Os04g56250
Os.49955.1.A1_at--1078--1371Chr04:33315573..33315597 (25 bp)
AGACCATTCATGTTGACCTTGTTAT
LOC_Os04g56250
Os.49955.1.A1_at--311--5431Chr04:33315538..33315562 (25 bp)
GAACCAGCATTTATACCAAAGTCAC
LOC_Os04g56250
Os.49955.1.A1_at--1071--2831Chr04:33315520..33315544 (25 bp)
AAGTCACACTCGCAATATAGCATCG
LOC_Os04g56250
Os.49955.1.A1_at--669--191Chr04:33315472..33315496 (25 bp)
ATTTGGTCCTATAAAGTTGGGCAGC
LOC_Os04g56250
Target Sequence 
GTATGATCCGTGCAACCACGATGATAATTTCAAGGTTGTTGATAAGCTTAAGGGATTTGGGATTGAGCATGATCGCGTTG
ACAGCTACCTGTTCGAGTCTGATCAAGGTGAGCTCATGGCTGTCCTCGTCGGCTACACTGGTACGCCTGTCCATGTCCTC
AAACTCAATGAGGAGACAATGGAGTGGGAGAAGATGGAATCCTTGGATGGACGGGCATTGTTCACCGGAACATACACGAC
AATGATGAGAAAAACCAAGCTTAAGTCGATGCAGAACAAGGTTTTCCTCCCGAGGTTGTATGAGTGGCCTAAGACCATTC
ATGTTGACCTTGTTATTCGTGATGGCGAACCAGCATTTATACCAAAGTCACACTCGCAATATAGCATCGAGAAGATCACC
TCTAATACGAGTATTTGGTCCTATAAAGTTGGGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49955.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis