Browse Element(s) Details


OsAffx.4192.1.S1_at

Description tigr:9632.m05484
TID=OsAffx.4192.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5628011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56230Os.22651.1.S1_at10/114+33305663..33309387Farnesyl pyrophosphate synthetase 2, putative, expressed
LOC_Os04g56240Os.7665.1.S1_at11/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56240Os.57060.1.S1_at1/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56250Os.49955.1.A1_at11/114+33315321..33316613F-box domain containing protein, expressed
LOC_Os04g56260OsAffx.22848.3.S1_x_at3/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_x_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56280OsAffx.4192.1.S1_at11/114+33332642..33333798hypothetical protein
LOC_Os04g56284Os.50886.1.S1_at10/114+33335765..33336297expressed protein
LOC_Os04g56290Os.9181.1.S1_x_at11/114+33338235..33344907Possible apospory-associated protein C, putative, expressed
LOC_Os04g56290Os.35113.1.S1_at11/114+33338235..33344907Possible apospory-associated protein C, putative, expressed
LOC_Os04g56300Os.17372.1.S1_at11/114+33346740..33349287expressed protein
LOC_Os04g56309NANA4+33350494..33354481hypothetical protein
LOC_Os04g56320Os.52480.1.S1_at11/114+33356080..33360581ATPase, AAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4192.1.S1_at--744--3411Chr04:33333131..33333155 (25 bp)
CAGCAATGGGCGAGGCACGAGTACC
LOC_Os04g56280
OsAffx.4192.1.S1_at--9--8711Chr04:33333282..33333306 (25 bp)
TGTCGTCGCAGGAGCCCGTGGTCAC
LOC_Os04g56280
OsAffx.4192.1.S1_at--791--7251Chr04:33333343..33333367 (25 bp)
GTCCAACTCCACTAACCTTGTGGAA
LOC_Os04g56280
OsAffx.4192.1.S1_at--742--5891Chr04:33333377..33333401 (25 bp)
GAGCTGTACTGCGTTTGGTTTAGAT
LOC_Os04g56280
OsAffx.4192.1.S1_at--280--6771Chr04:33333394..33333418 (25 bp)
GTTTAGATACCCGATCCGATGCCTC
LOC_Os04g56280
OsAffx.4192.1.S1_at--336--4151Chr04:33333429..33333453 (25 bp)
CGCGCGTCAGCGTCTATAAGCTTGA
LOC_Os04g56280
OsAffx.4192.1.S1_at--787--351Chr04:33333444..33333468 (25 bp)
ATAAGCTTGATTACATGGCGGCGAA
LOC_Os04g56280
OsAffx.4192.1.S1_at--99--5291Chr04:33333510..33333534 (25 bp)
GAAGGTCGTTTTTCATCGGTCAAGA
LOC_Os04g56280
OsAffx.4192.1.S1_at--869--10011Chr04:33333535..33333559 (25 bp)
TAGAATTGGAGCGTCGTTCGATGCG
LOC_Os04g56280
OsAffx.4192.1.S1_at--415--4711Chr04:33333566..33333590 (25 bp)
GCTGGCCTAAAACCGAATTGCATCT
LOC_Os04g56280
OsAffx.4192.1.S1_at--495--3551Chr04:33333586..33333610 (25 bp)
CATCTATTATTACTGGTTGCTGAAC
LOC_Os04g56280
Target Sequence 
CAGCAATGGGCGAGGCACGAGTACCTCCAGCCCGGCACGCCTCACCACGAGCACCGCGACGACGTCCTCCGCGCGATAGG
GCGGCTCACGGCGGTAGACGGCAGCAAGCTCCTCGTGGACCTCGTCGATCACCGCCTCGCCGTGCTCGAGCTGTCGTCGC
AGGAGCCCGTGGTCACCGTGGTCGCCGCGGAGGGCGTCTCGGTGGCGTGCACGTCCAACTCCACTAACCTTGTGGAATCG
GACGGGGAGCTGTACTGCGTTTGGTTTAGATACCCGATCCGATGCCTCCGGATCGTTGCGCGCGTCAGCGTCTATAAGCT
TGATTACATGGCGGCGAAGGGATCAGCGACATGGATGAAGGTGAAGTCGCTCGGTGGACGAAGGTCGTTTTTCATCGGTC
AAGATAGAATTGGAGCGTCGTTCGATGCGGAGGAAGCTGGCCTAAAACCGAATTGCATCTATTATTACTGGTTGCTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis