Browse Element(s) Details


Os.50886.1.S1_at

Description gb:AK059216.1
DB_XREF= gi:32969234
TID=Os.50886.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50886 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-C08, full insert sequence.
FL= gb:AK059216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5628410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56240Os.7665.1.S1_at11/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56240Os.57060.1.S1_at1/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56250Os.49955.1.A1_at11/114+33315321..33316613F-box domain containing protein, expressed
LOC_Os04g56260OsAffx.22848.3.S1_x_at3/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_x_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56280OsAffx.4192.1.S1_at11/114+33332642..33333798hypothetical protein
LOC_Os04g56284Os.50886.1.S1_at10/114+33335765..33336297expressed protein
LOC_Os04g56290Os.9181.1.S1_x_at11/114+33338235..33344907Possible apospory-associated protein C, putative, expressed
LOC_Os04g56290Os.35113.1.S1_at11/114+33338235..33344907Possible apospory-associated protein C, putative, expressed
LOC_Os04g56300Os.17372.1.S1_at11/114+33346740..33349287expressed protein
LOC_Os04g56309NANA4+33350494..33354481hypothetical protein
LOC_Os04g56320Os.52480.1.S1_at11/114+33356080..33360581ATPase, AAA family protein, expressed
LOC_Os04g56330OsAffx.26631.1.S1_at11/114+33361246..33363275ABC transporter family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50886.1.S1_at--610--7111Chr04:33335840..33335863 (24 bp)
GTCAGCTTCATGGAGCTCCGAGACA
LOC_Os04g56284
Os.50886.1.S1_at--1153--5891NONE
GAGCTCCGAGACAAATCTTTCGAGG
NONE
Os.50886.1.S1_at--595--1451Chr04:33335984..33336008 (25 bp)
AGAAGTACTCGGAGCTCGACGACGC
LOC_Os04g56284
Os.50886.1.S1_at--17--1471Chr04:33336059..33336083 (25 bp)
AGAAGTGACTGACCGACATCTCGAT
LOC_Os04g56284
Os.50886.1.S1_at--1086--691Chr04:33336087..33336111 (25 bp)
ATGATCAGATCAGCCCAACTGCCTG
LOC_Os04g56284
Os.50886.1.S1_at--910--7971Chr04:33336121..33336145 (25 bp)
GGATGATGAACCGTCGTTGTCGTCG
LOC_Os04g56284
Os.50886.1.S1_at--845--9391Chr04:33336134..33336158 (25 bp)
TCGTTGTCGTCGTTGGTCATTTCCT
LOC_Os04g56284
Os.50886.1.S1_at--910--7811Chr04:33336148..33336172 (25 bp)
GGTCATTTCCTTGCTAGATGCTAGT
LOC_Os04g56284
Os.50886.1.S1_at--387--1551Chr04:33336206..33336230 (25 bp)
AGCTTGTTTCAGTACTGGTCTTCCA
LOC_Os04g56284
Os.50886.1.S1_at--1104--9571Chr04:33336224..33336248 (25 bp)
TCTTCCATCTCATCCGTTTTTGTAT
LOC_Os04g56284
Os.50886.1.S1_at--846--3411Chr04:33336273..33336297 (25 bp)
CAGAAAATAGCTGCCCTGGATCGAT
LOC_Os04g56284
Target Sequence 
GTCAGCTTCATGGAGCTCCGAGACAAATCTTTCGAGGAACTCGACGAGAAGTACTCGGAGCTCGACGACGCCGGCGGCCA
GCAGCGCCGCGCGCGACGGCGGGCCGAGCGCAAGTCCAGGAAGAAGTGACTGACCGACATCTCGATATGATGATCAGATC
AGCCCAACTGCCTGAGAACAGGAGGATGATGAACCGTCGTTGTCGTCGTTGGTCATTTCCTTGCTAGATGCTAGTAGTGG
TTAATTATCGAATGTAAACCTGATTTCAAGCTTGTTTCAGTACTGGTCTTCCATCTCATCCGTTTTTGTATTGAAATTTG
GCAAGTTCAAAGTTGCAGAAAATAGCTGCCCTGGATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis