Browse Element(s) Details


Os.17372.1.S1_at

Description gb:AK065495.1
DB_XREF= gi:32975513
TID=Os.17372.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17372 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013021B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021B22, full insert sequence.
FL= gb:AK065495.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5630011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56260OsAffx.22848.3.S1_x_at3/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_x_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56280OsAffx.4192.1.S1_at11/114+33332642..33333798hypothetical protein
LOC_Os04g56284Os.50886.1.S1_at10/114+33335765..33336297expressed protein
LOC_Os04g56290Os.9181.1.S1_x_at11/114+33338235..33344907Possible apospory-associated protein C, putative, expressed
LOC_Os04g56290Os.35113.1.S1_at11/114+33338235..33344907Possible apospory-associated protein C, putative, expressed
LOC_Os04g56300Os.17372.1.S1_at11/114+33346740..33349287expressed protein
LOC_Os04g56309NANA4+33350494..33354481hypothetical protein
LOC_Os04g56320Os.52480.1.S1_at11/114+33356080..33360581ATPase, AAA family protein, expressed
LOC_Os04g56330OsAffx.26631.1.S1_at11/114+33361246..33363275ABC transporter family protein
LOC_Os04g56340NANA4+33366752..33367006hypothetical protein
LOC_Os04g56350Os.14253.1.S2_at11/114+33370801..33372769Nucleolar protein, Nop52 containing protein, expressed
LOC_Os04g56350Os.14253.1.S1_s_at11/114+33370801..33372769Nucleolar protein, Nop52 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17372.1.S1_at--835--6811Chr04:33348740..33348764 (25 bp)
GTTTTTGGTGCCCATCTGATGTACA
LOC_Os04g56300
Os.17372.1.S1_at--644--5411Chr04:33348773..33348797 (25 bp)
GAAGCGATTATACTGCAGTCAAGCA
LOC_Os04g56300
Os.17372.1.S1_at--347--10551Chr04:33348864..33348888 (25 bp)
TTCTTTTCTCCTGATAAATGCCCTC
LOC_Os04g56300
Os.17372.1.S1_at--647--5371Chr04:33348894..33348918 (25 bp)
GAAGAATATCTTCCGTTGACGTTGC
LOC_Os04g56300
Os.17372.1.S1_at--644--6651Chr04:33348908..33348932 (25 bp)
GTTGACGTTGCTTAGACCTCATTAG
LOC_Os04g56300
Os.17372.1.S1_at--824--1751Chr04:33348923..33348947 (25 bp)
ACCTCATTAGCTCTCCTGAGATGGA
LOC_Os04g56300
Os.17372.1.S1_at--601--1951Chr04:33348949..33348973 (25 bp)
ACTGTTCATCCAAAAGTCCCAACTT
LOC_Os04g56300
Os.17372.1.S1_at--165--1151Chr04:33348963..33348987 (25 bp)
AGTCCCAACTTCTATGTAACATCTG
LOC_Os04g56300
Os.17372.1.S1_at--320--651Chr04:33349013..33349037 (25 bp)
ATGCAAGAGCTGTCCTGTAACTTAT
LOC_Os04g56300
Os.17372.1.S1_at--392--8791Chr04:33349179..33349203 (25 bp)
TGTTAGATCTCTAAGACCTCTCCTC
LOC_Os04g56300
Os.17372.1.S1_at--9--751Chr04:33349239..33349263 (25 bp)
ATGTTTCCATCTTCACTCCAGATAT
LOC_Os04g56300
Target Sequence 
GTTTTTGGTGCCCATCTGATGTACATTTGAGCTGAAGCGATTATACTGCAGTCAAGCAACAGAAGATGCGCATTTGGGGA
TAAGGCAGAATTCTGCTGTCAGATTTGCAGCGAAAGAAAGCCAATTCTTTTCTCCTGATAAATGCCCTCATAAAGAAGAA
TATCTTCCGTTGACGTTGCTTAGACCTCATTAGCTCTCCTGAGATGGAGACTGTTCATCCAAAAGTCCCAACTTCTATGT
AACATCTGGCATAAGGGGACAGAAGACAGCAAAATGCAAGAGCTGTCCTGTAACTTATAGGAAAATGTTCTGTAAGTTTC
TAGGTCAGGATGTACATTATTGATTCCAAAATTTTCTAGGTATCTTCAGTACTAATTTCAGGGATGTTGAACGTTAATTT
TATTTAAATTCTTTTGTAACTGTGTTTTTGAAANNNATATGTTAGATCTCTAAGACCTCTCCTCTCCCTTGATGTGTTTG
TCTGCTTGGGAGTGGGTAGATGTTTCCATCTTCACTCCAGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis