Browse Element(s) Details


Os.52480.1.S1_at

Description gb:AK067399.1
DB_XREF= gi:32977417
TID=Os.52480.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52480 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106M01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106M01, full insert sequence.
FL= gb:AK067399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5632011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56280OsAffx.4192.1.S1_at11/114+33332642..33333798hypothetical protein
LOC_Os04g56284Os.50886.1.S1_at10/114+33335765..33336297expressed protein
LOC_Os04g56290Os.9181.1.S1_x_at11/114+33338235..33344907Possible apospory-associated protein C, putative, expressed
LOC_Os04g56290Os.35113.1.S1_at11/114+33338235..33344907Possible apospory-associated protein C, putative, expressed
LOC_Os04g56300Os.17372.1.S1_at11/114+33346740..33349287expressed protein
LOC_Os04g56309NANA4+33350494..33354481hypothetical protein
LOC_Os04g56320Os.52480.1.S1_at11/114+33356080..33360581ATPase, AAA family protein, expressed
LOC_Os04g56330OsAffx.26631.1.S1_at11/114+33361246..33363275ABC transporter family protein
LOC_Os04g56340NANA4+33366752..33367006hypothetical protein
LOC_Os04g56350Os.14253.1.S2_at11/114+33370801..33372769Nucleolar protein, Nop52 containing protein, expressed
LOC_Os04g56350Os.14253.1.S1_s_at11/114+33370801..33372769Nucleolar protein, Nop52 containing protein, expressed
LOC_Os04g56360OsAffx.26633.1.S1_at11/114+33375236..33377019Protein kinase domain containing protein
LOC_Os04g56360OsAffx.28666.1.S1_x_at1/114+33375236..33377019Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009507cellular_componentchloroplast
GO:0016887molecular_functionATPase activity
GO:0030234molecular_functionenzyme regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52480.1.S1_at--887--1371Chr04:33357496..33357515 (20 bp)
AGACACTTTTCCAAACCAAGCTCTG
LOC_Os04g56320
Os.52480.1.S1_at--810--2631Chr04:33357172..33357493 (25 bp)
AACCAAGCTCTGGACTTTTATGGAG
LOC_Os04g56320
Os.52480.1.S1_at--669--9231Chr04:33357139..33357163 (25 bp)
TCCAGGACATACGATCGGGCAATCT
LOC_Os04g56320
Os.52480.1.S1_at--317--6031Chr04:33356712..33356736 (25 bp)
GAGAGGAGCTTCCAACATTTATTCC
LOC_Os04g56320
Os.52480.1.S1_at--569--171Chr04:33356475..33356720 (25 bp)
ATTTATTCCTCCAAAGACCACTGTA
LOC_Os04g56320
Os.52480.1.S1_at--866--5851Chr04:33356460..33356484 (25 bp)
GACCACTGTAGATGCGTTGATTGAA
LOC_Os04g56320
Os.52480.1.S1_at--1004--5971Chr04:33356330..33356354 (25 bp)
GAGAAAGTACTCGAGGTGCCTATCT
LOC_Os04g56320
Os.52480.1.S1_at--462--9191Chr04:33356314..33356338 (25 bp)
TGCCTATCTCAACCCGATTTTGTAT
LOC_Os04g56320
Os.52480.1.S1_at--682--4971Chr04:33356283..33356307 (25 bp)
GCATCTCTGAAAACTGCACCTTTCT
LOC_Os04g56320
Os.52480.1.S1_at--558--4271Chr04:33356238..33356262 (25 bp)
CCTGCATCCTACATTCTACAGAACA
LOC_Os04g56320
Os.52480.1.S1_at--1024--7031Chr04:33356108..33356132 (25 bp)
GTACAATGGTTTGCAACTCTGAACT
LOC_Os04g56320
Target Sequence 
AGACACTTTTCCAAACCAAGCTCTGGACTTTTATGGAGCTTTGAGATCCAGGACATACGATCGGGCAATCTTGCAGTGGG
TAGAAGAGATTGGTGGTCATGAACAACTAAATGAAAAGCTTCTCAAGCGAAAGAAAGGAGAGGAGCTTCCAACATTTATT
CCTCCAAAGACCACTGTAGATGCGTTGATTGAATCTGGGGACTCTCTGGTGAAAGAGCAAGAACTGATAATGAATTCGAA
ACTGTCAAAAGAATATATGAAGAATTTAGATGATTAGTTCAAAACAAAAGGTCTAATAGAGAAAGTACTCGAGGTGCCTA
TCTCAACCCGATTTTGTATATTTTTGCATCTCTGAAAACTGCACCTTTCTTTCTCTCTCTCTTTGGTGCCCCTGCATCCT
ACATTCTACAGAACAGTTGCATGTGCAAGTATACGATAGTGTATAAAAGAACATGAAAAGGTATACAAGAATTTTTTCGG
CTGTGTTTTATGTATTTTAGATATCTTTATATAATCGTTTGTACAATGGTTTGCAACTCTGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis