Browse Element(s) Details


OsAffx.28666.1.S1_x_at

Description tigr:9635.m02921
TID=OsAffx.28666.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2995011/11hypothetical protein
LOC_Os04g563601/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29920OsAffx.16487.1.S1_at11/117+17609713..17610284hypothetical protein
LOC_Os07g29920Os.45902.1.A1_at6/117+17609713..17610284hypothetical protein
LOC_Os07g29920Os.45902.1.A1_x_at3/117+17609713..17610284hypothetical protein
LOC_Os07g29930OsAffx.16488.1.S1_at11/117+17618561..17619638expressed protein
LOC_Os07g29940OsAffx.5481.1.S1_at11/117+17625538..17627019hypothetical protein
LOC_Os07g29950OsAffx.28666.1.S1_x_at11/117+17633468..17634329hypothetical protein
LOC_Os07g29950OsAffx.28666.1.S1_at11/117+17633468..17634329hypothetical protein
LOC_Os07g29960OsAffx.28116.1.S1_s_at1/117+17639029..17641558Cytochrome P450 family protein, expressed
LOC_Os07g29970OsAffx.5482.1.S1_at11/117+17651310..17651802hypothetical protein
LOC_Os07g29980NANA7+17655051..17658355transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28666.1.S1_x_at--1104--1571Chr07:17633592..17633807 (25 bp)
AGCTCATGGCATGGAGGCTGTACGA
LOC_Os07g29950
OsAffx.28666.1.S1_x_at--241--8272Chr07:17633790..17633814 (25 bp)
GGCATGGAGGCTGTACGAGCAATCC
LOC_Os07g29950
OsAffx.28666.1.S1_x_at--867--1471Chr07:17633807..17633831 (25 bp)
AGCAATCCAAGGTAATGGAGCTCAT
LOC_Os07g29950
OsAffx.28666.1.S1_x_at--325--3031Chr07:17633810..17633834 (25 bp)
AATCCAAGGTAATGGAGCTCATCGA
LOC_Os07g29950
OsAffx.28666.1.S1_x_at--226--591Chr07:17633811..17633835 (25 bp)
ATCCAAGGTAATGGAGCTCATCGAC
LOC_Os07g29950
OsAffx.28666.1.S1_x_at--149--8551Chr07:17633822..17633846 (25 bp)
TGGAGCTCATCGACGCGAAGATGCA
LOC_Os07g29950
OsAffx.28666.1.S1_x_at--336--4831Chr07:17633826..17633850 (25 bp)
GCTCATCGACGCGAAGATGCAGGCC
LOC_Os07g29950
OsAffx.28666.1.S1_x_at--887--9611Chr07:17633828..17633852 (25 bp)
TCATCGACGCGAAGATGCAGGCCAA
LOC_Os07g29950
OsAffx.28666.1.S1_x_at--235--531Chr07:17633830..17633854 (25 bp)
ATCGACGCGAAGATGCAGGCCAATG
LOC_Os07g29950
OsAffx.28666.1.S1_x_at--849--3471Chr07:17633845..17633869 (25 bp)
CAGGCCAATGGGTTCGACGAGAAGC
LOC_Os07g29950
OsAffx.28666.1.S1_x_at--623--4371Chr07:17633849..17633873 (25 bp)
CCAATGGGTTCGACGAGAAGCGGCA
LOC_Os07g29950
Target Sequence 
AGCTCATGGCATGGAGGCTGTACGAGCAATCCAAGGTAATGGAGCTCATCGACGCGAAGATGCAGGCCAATGGGTTCGAC
GAGAAGCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28666.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis