Browse Element(s) Details


OsAffx.28116.1.S1_s_at

Description tigr:9634.m04407
TID=OsAffx.28116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PA domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4538011/11Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os07g299601/11Cytochrome P450 family protein, expressed
LOC_Os09g182301/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45350Os.34343.1.S2_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.34343.1.S1_a_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.49575.1.S1_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.34343.1.S2_s_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45360Os.51301.1.S1_at11/116+27418371..27426848metallopeptidase family M24 containing protein, expressed
LOC_Os06g45360Os.51301.1.S1_x_at11/116+27418371..27426848metallopeptidase family M24 containing protein, expressed
LOC_Os06g45370Os.15065.1.S1_at11/116+27427893..27430110fructose-1,6-bisphosphatase family protein, expressed
LOC_Os06g45380OsAffx.28116.1.S1_s_at11/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380OsAffx.28116.1.S1_x_at11/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380Os.17353.1.S1_at10/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380Os.20764.1.S1_s_at1/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45390OsAffx.15936.1.S1_at10/116+27440488..27443852expressed protein
LOC_Os06g45399NANA6+27445969..27446559NA
LOC_Os06g45410Os.50003.1.S1_at11/116+27455060..27458560myb family transcription factor-related protein, putative, expressed
LOC_Os06g45420OsAffx.15937.1.S1_at11/116+27461108..27462017hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006623biological_processprotein targeting to vacuole
GO:0006886biological_processintracellular protein transport
GO:0009826biological_processunidimensional cell growth
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0005802cellular_componentGolgi trans face
GO:0005887cellular_componentintegral to plasma membrane
GO:0017119cellular_componentGolgi transport complex
GO:0016301molecular_functionkinase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28116.1.S1_s_at--696--3351Chr06:27434998..27435022 (25 bp)
CACGCCCAGATCATGGAGAGAGGTG
LOC_Os06g45380
OsAffx.28116.1.S1_s_at--731--3451Chr06:27435117..27435141 (25 bp)
CAGGCAAGTGACTTCCTTCGTTTCA
LOC_Os06g45380
OsAffx.28116.1.S1_s_at--1111--5171Chr06:27435120..27435144 (25 bp)
GCAAGTGACTTCCTTCGTTTCAGAT
LOC_Os06g45380
OsAffx.28116.1.S1_s_at--658--2853Chr07:26224958..26225028 (25 bp)
AAGTGACTTCCTTCGTTTCAGATTA
NONE
OsAffx.28116.1.S1_s_at--500--5697Chr07:26225009..26225031 (23 bp)
GACTTCCTTCGTTTCAGATTATAAA
NONE
OsAffx.28116.1.S1_s_at--1069--114Chr07:26225010..26225031 (22 bp)
CTTCCTTCGTTTCAGATTATAAATC
NONE
OsAffx.28116.1.S1_s_at--521--10372Chr06:27435167..27435191 (25 bp)
TTTTTTAATCATACTTCCTTCATTT
LOC_Os06g45380
OsAffx.28116.1.S1_s_at--754--3074Chr06:27435173..27435197 (25 bp)
AATCATACTTCCTTCATTTTATATT
LOC_Os06g45380
OsAffx.28116.1.S1_s_at--504--2295Chr12:7703350..7703373 (23 bp)
AAATGTTGCTAAGTTTTCTATAAAT
NONE
OsAffx.28116.1.S1_s_at--257--691Chr06:27435367..27435391 (25 bp)
TGGTTAAACTTAGACTACTTATAAT
LOC_Os06g45380
OsAffx.28116.1.S1_s_at--738--3651Chr06:27435384..27435408 (25 bp)
CTTATAATATGAAGTACCTCTTTTT
LOC_Os06g45380
Target Sequence 
CACGCCCAGATCATGGAGAGAGGTGGCTACGCCCTCTTCACCCCGCACTACATCACCTGGTACTGCCCCGAGGCCTTCAA
GCTCACCCAGCAGTGCAAGTCCCAGTGCATCAACCATGGCAGGCAAGTGACTTCCTTCGTTTCAGATTATAAATCGTTTC
GATTTCTTTTTTTTTAATCATACTTCCTTCATTTTATATTATTATTACGTCGTTTTCACTTTTCTTATATCCAAACTTAA
ATTTGATTAAGTTTATAGAAAAATTAGTAACATCTACAACACCAAATTGGTTTCACTAAAACTAACATTTATGTATATTG
ATAATATTTTTCTTTTGTGTCGGAAATGTTGCTAAGTTTTCTATAAATTTGGTTAAACTTAGACTACTTATAATATGAAG
TACCTCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28116.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis