Browse Element(s) Details


Os.50003.1.S1_at

Description gb:AK119588.1
DB_XREF= gi:37989211
TID=Os.50003.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-117-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-C12, full insert sequence.
FL= gb:AK119588.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4541011/11myb family transcription factor-related protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45370Os.15065.1.S1_at11/116+27427893..27430110fructose-1,6-bisphosphatase family protein, expressed
LOC_Os06g45380OsAffx.28116.1.S1_s_at11/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380OsAffx.28116.1.S1_x_at11/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380Os.17353.1.S1_at10/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380Os.20764.1.S1_s_at1/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45390OsAffx.15936.1.S1_at10/116+27440488..27443852expressed protein
LOC_Os06g45399NANA6+27445969..27446559NA
LOC_Os06g45410Os.50003.1.S1_at11/116+27455060..27458560myb family transcription factor-related protein, putative, expressed
LOC_Os06g45420OsAffx.15937.1.S1_at11/116+27461108..27462017hypothetical protein
LOC_Os06g45430Os.4719.1.S1_at11/116+27465368..27468861LEM3 family/CDC50 family protein, expressed
LOC_Os06g45440Os.17920.1.S1_at11/116+27468979..27470808haloacid dehalogenase-like hydrolase family protein, expressed
LOC_Os06g45450OsAffx.28117.1.S1_at11/116+27472218..27473452hypothetical protein
LOC_Os06g45460OsAffx.5114.1.S1_at11/116+27479085..27480390F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0010088biological_processphloem histogenesis
GO:0010089biological_processxylem histogenesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50003.1.S1_at--726--6432Chr06:27457969..27457993 (25 bp)
GATCATCAGCTCCAGATGGCGGCGC
LOC_Os06g45410
Os.50003.1.S1_at--810--8431Chr06:27458019..27458043 (25 bp)
GGCCATCACCATGTCAGGAGGAGAC
LOC_Os06g45410
Os.50003.1.S1_at--638--8911Chr06:27458075..27458099 (25 bp)
TGAGCTCTAAGCTTGACATGAGATC
LOC_Os06g45410
Os.50003.1.S1_at--246--2031Chr06:27458109..27458133 (25 bp)
ACAGCAAACAGTGCTACCTGTAGGA
LOC_Os06g45410
Os.50003.1.S1_at--832--7271Chr06:27458150..27458174 (25 bp)
GTCCAATTGTTGGAGCCAAGGCTAG
LOC_Os06g45410
Os.50003.1.S1_at--140--8171Chr06:27458174..27458198 (25 bp)
GGAACATCTCCTATGGGTAAACTAA
LOC_Os06g45410
Os.50003.1.S1_at--519--1531Chr06:27458262..27458286 (25 bp)
AGCAGGCTGAACTGATCTTGCAAGA
LOC_Os06g45410
Os.50003.1.S1_at--696--6411Chr06:27458421..27458445 (25 bp)
GATCTAGATAATTAGTCGTGCCTAC
LOC_Os06g45410
Os.50003.1.S1_at--1144--7191Chr06:27458435..27458459 (25 bp)
GTCGTGCCTACATTCTTAATTTTGG
LOC_Os06g45410
Os.50003.1.S1_at--375--7151Chr06:27458490..27458514 (25 bp)
GTCTTAATTCATCCATGCTTGTCTG
LOC_Os06g45410
Os.50003.1.S1_at--304--4331Chr06:27458502..27458526 (25 bp)
CCATGCTTGTCTGAACATTAACGAA
LOC_Os06g45410
Target Sequence 
GATCATCAGCTCCAGATGGCGGCGCCGGCGACGACGACGATGATGATGGAGGCCATCACCATGTCAGGAGGAGACTCNAT
GGGCAGTAAGGGGTTTGAGGGTCAGATGAGCTCTAAGCTTGACATGAGATCACCACNTCCACAGCAAACAGTGCTACCTG
TAGGAAGTGAGAGGATGAGTAGTCCAATTGTTGGAGCCAAGGCTAGGAACATCTCCTATGGGTAAACTAATTGATGATGA
ATTGAAGAGGTAATTATATTAACTGCATGTTTAATTTTGTGGTGAAACCAGCAAGCAGGCTGAACTGATCTTGCAAGATC
ACTGAATAAGCATATGTAACTGTCTTGTTATTAGTTGGGAGAGTATACAAAAGTAGTATTGCATTATGCATCGTTCAATT
AATTAGGATGCATCCATGCATGCAATTAATTAAGTTCTTGAGAGAGGAGGGTGATCTAGATAATTAGTCGTGCCTACATT
CTTAATTTTGGCTTAAAGTTTGTAAATTTTAATTTTGTGTTGTCTTAATTCATCCATGCTTGTCTGAACATTAACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis