Browse Element(s) Details


OsAffx.5114.1.S1_at

Description tigr:9634.m04416
TID=OsAffx.5114.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to unusual floral organs protein UFO - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4546011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45410Os.50003.1.S1_at11/116+27455060..27458560myb family transcription factor-related protein, putative, expressed
LOC_Os06g45420OsAffx.15937.1.S1_at11/116+27461108..27462017hypothetical protein
LOC_Os06g45430Os.4719.1.S1_at11/116+27465368..27468861LEM3 family/CDC50 family protein, expressed
LOC_Os06g45440Os.17920.1.S1_at11/116+27468979..27470808haloacid dehalogenase-like hydrolase family protein, expressed
LOC_Os06g45450OsAffx.28117.1.S1_at11/116+27472218..27473452hypothetical protein
LOC_Os06g45460OsAffx.5114.1.S1_at11/116+27479085..27480390F-box domain containing protein
LOC_Os06g45470OsAffx.5115.1.S1_at11/116+27492243..27492452hypothetical protein
LOC_Os06g45480Os.11403.1.S1_at11/116+27494298..27498534peptidase M20/M25/M40 family protein, putative, expressed
LOC_Os06g45490OsAffx.28118.1.S1_at8/116+27504349..27505654hypothetical protein
LOC_Os06g45490OsAffx.25317.1.S1_at1/116+27504349..27505654hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009933biological_processmeristem organization
GO:0000151cellular_componentubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5114.1.S1_at--402--8271Chr06:27479651..27479672 (22 bp)
GGCAGGTTCTACTGCATGAGCTCGT
LOC_Os06g45460
OsAffx.5114.1.S1_at--254--9391Chr06:27479630..27479654 (25 bp)
TCGTCGCCGTTTGCGGTTCTGGTGT
LOC_Os06g45460
OsAffx.5114.1.S1_at--1083--4491Chr06:27479625..27479649 (25 bp)
GCCGTTTGCGGTTCTGGTGTTCGAC
LOC_Os06g45460
OsAffx.5114.1.S1_at--109--4031Chr06:27479623..27479647 (25 bp)
CGTTTGCGGTTCTGGTGTTCGACGT
LOC_Os06g45460
OsAffx.5114.1.S1_at--645--10611Chr06:27479614..27479638 (25 bp)
TTCTGGTGTTCGACGTGGCGGAGAA
LOC_Os06g45460
OsAffx.5114.1.S1_at--454--2591Chr06:27479591..27479615 (25 bp)
AACGTATGGAGCAAGGTGCAGCCGC
LOC_Os06g45460
OsAffx.5114.1.S1_at--494--10111Chr06:27479587..27479611 (25 bp)
TATGGAGCAAGGTGCAGCCGCCGAT
LOC_Os06g45460
OsAffx.5114.1.S1_at--925--5951Chr06:27479583..27479607 (25 bp)
GAGCAAGGTGCAGCCGCCGATGAGG
LOC_Os06g45460
OsAffx.5114.1.S1_at--828--8711Chr06:27479488..27479512 (25 bp)
TGTCGGCCGTCGAGAAGAGCCGTCT
LOC_Os06g45460
OsAffx.5114.1.S1_at--754--9372Chr07:21455641..21455664 (24 bp)
TCGAGAAGAGCCGTCTCAGCGTGCC
NONE
OsAffx.5114.1.S1_at--812--1452Chr07:21455641..21455661 (21 bp)
AGAAGAGCCGTCTCAGCGTGCCCCG
NONE
Target Sequence 
GGCAGGTTCTACTGCATGAGCTCGTCGCCGTTTGCGGTTCTGGTGTTCGACGTGGCGGAGAACGTATGGAGCAAGGTGCA
GCCGCCGATGAGGCGGTTCCTGAGGTCGCCGGCGCTGGTGGAGCTCGGCGGCGGGAGGGAGGGAGCGGCGAGGGTGGCGC
TGGTGTCGGCCGTCGAGAAGAGCCGTCTCAGCGTGCCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis