Browse Element(s) Details


Os.11403.1.S1_at

Description gb:AK073262.1
DB_XREF= gi:32983285
TID=Os.11403.1
CNT=46
FEA=FLmRNA
TIER=FL+Stack
STK=18
UG=Os.11403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033026H23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033026H23, full insert sequence.
FL= gb:AK073262.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4548011/11peptidase M20/M25/M40 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45440Os.17920.1.S1_at11/116+27468979..27470808haloacid dehalogenase-like hydrolase family protein, expressed
LOC_Os06g45450OsAffx.28117.1.S1_at11/116+27472218..27473452hypothetical protein
LOC_Os06g45460OsAffx.5114.1.S1_at11/116+27479085..27480390F-box domain containing protein
LOC_Os06g45470OsAffx.5115.1.S1_at11/116+27492243..27492452hypothetical protein
LOC_Os06g45480Os.11403.1.S1_at11/116+27494298..27498534peptidase M20/M25/M40 family protein, putative, expressed
LOC_Os06g45490OsAffx.28118.1.S1_at8/116+27504349..27505654hypothetical protein
LOC_Os06g45490OsAffx.25317.1.S1_at1/116+27504349..27505654hypothetical protein
LOC_Os06g45500NANA6+27516402..27522535Copper-transporting ATPase RAN1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008237molecular_functionmetallopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11403.1.S1_at--824--3251Chr06:27495087..27495107 (21 bp)
CAACGTCATACCAGGCCAGGTGAAC
LOC_Os06g45480
Os.11403.1.S1_at--639--8971Chr06:27494960..27494984 (25 bp)
TGAACTTCACGGTGGACATACGCGC
LOC_Os06g45480
Os.11403.1.S1_at--355--8131Chr06:27494947..27494971 (25 bp)
GGACATACGCGCCATGGACGACAAG
LOC_Os06g45480
Os.11403.1.S1_at--454--8891Chr06:27494921..27494945 (25 bp)
TGAGGGAGACGATCGTCACCAGCTT
LOC_Os06g45480
Os.11403.1.S1_at--959--1391Chr06:27494915..27494939 (25 bp)
AGACGATCGTCACCAGCTTCTCGAG
LOC_Os06g45480
Os.11403.1.S1_at--665--1551Chr06:27494901..27494925 (25 bp)
AGCTTCTCGAGGCTTGTTCTTCAGA
LOC_Os06g45480
Os.11403.1.S1_at--1000--10511Chr06:27494882..27494906 (25 bp)
TTCAGAGATGCGACGACAGATTGGT
LOC_Os06g45480
Os.11403.1.S1_at--239--1851Chr06:27494870..27494894 (25 bp)
ACGACAGATTGGTCGACTGCGCCGT
LOC_Os06g45480
Os.11403.1.S1_at--146--1991Chr06:27494748..27494879 (25 bp)
ACTGCGCCGTCGAGCAGAAGCACGC
LOC_Os06g45480
Os.11403.1.S1_at--886--3631Chr06:27494456..27494480 (25 bp)
CTTCATTGACCAGAACGCGGTGGAT
LOC_Os06g45480
Os.11403.1.S1_at--477--1051Chr06:27494376..27494400 (25 bp)
AGGTGTGTGCCTAGTAGCCTACAAA
LOC_Os06g45480
Target Sequence 
CAACGTCATACCAGGCCAGGTGAACTTCACGGTGGACATACGCGCCATGGACGACAAGGTGAGGGAGACGATCGTCACCA
GCTTCTCGAGGCTTGTTCTTCAGAGATGCGACGACAGATTGGTCGACTGCGCCGTCGAGCAGAAGCACGCGGCGGCGGCG
ACGCCGTGCGACGCGGAGCTGACGTCGCGGCTGGAGCGCGCGACGCGGTCGACGATCTCGTCGATGGCGGCGGGCGTGCG
CCGGGCCGGCGGCGAGACGCCGGTGCTGATGAGCGGAGCGGGGCACGACGCGATGGCGATGGCGAGGCTGACGAAGGTGG
GGATGCTGTTCGTGCGGTGCCGCGGCGGCGTGAGCCACTCGCCGGAGGAGTCCGTGATGGACGACGACGTCTGGGCCGCC
GGCCTCGCGCTGGTCAACTTCATTGACCAGAACGCGGTGGATGCGGCGGCGGCGACGGCGGCGGAATCGTGACGACGACG
GCGGCGATTCTTTTGGTAGGTGTGTGCCTAGTAGCCTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis