Browse Element(s) Details


OsAffx.25317.1.S1_at

Description tigr:9631.m03082
TID=OsAffx.25317.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3137010/11hypothetical protein
LOC_Os12g187101/11hypothetical protein
LOC_Os06g454901/11hypothetical protein
LOC_Os12g159601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31320Os.49432.1.S1_at11/113+17805610..17808599RING zinc finger protein, putative, expressed
LOC_Os03g31340OsAffx.3380.1.S1_x_at11/113+17814086..17814383Protein transport protein SEC61 gamma subunit, putative
LOC_Os03g31340OsAffx.3380.1.S1_at11/113+17814086..17814383Protein transport protein SEC61 gamma subunit, putative
LOC_Os03g31360Os.8013.1.S1_at11/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31360Os.12807.2.S1_x_at2/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31360OsAffx.27508.71.S1_s_at1/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31370OsAffx.25317.1.S1_at10/113+17827085..17828044hypothetical protein
LOC_Os03g31370OsAffx.26847.1.S1_x_at1/113+17827085..17828044hypothetical protein
LOC_Os03g31380OsAffx.13141.1.S1_at9/113+17832791..17835173hypothetical protein
LOC_Os03g31390OsAffx.25318.1.S1_at11/113+17837820..17838547hypothetical protein
LOC_Os03g31400Os.10677.2.S1_at11/113+17839850..17846915U-box domain containing protein, expressed
LOC_Os03g31400Os.10677.1.A1_at11/113+17839850..17846915U-box domain containing protein, expressed
LOC_Os03g31410Os.51453.1.S1_x_at6/113+17848145..17848436hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25317.1.S1_at--130--4691Chr03:17827464..17827488 (25 bp)
GCGGCAGTGATGGTAGGGTTTGTTT
LOC_Os03g31370
OsAffx.25317.1.S1_at--556--4239Chr06:18983026..18983050 (25 bp)
CCGAGCCCAATAACCGAAATGACCG
NONE
OsAffx.25317.1.S1_at--893--10611Chr03:17827601..17827625 (25 bp)
TTCGATCTTCTGAGGGCTGAGACCG
LOC_Os03g31370
OsAffx.25317.1.S1_at--361--9571Chr03:17827606..17827630 (25 bp)
TCTTCTGAGGGCTGAGACCGAACAG
LOC_Os03g31370
OsAffx.25317.1.S1_at--945--7571Chr03:17827614..17827983 (25 bp)
GGGCTGAGACCGAACAGCTTTGCTT
LOC_Os03g31370
OsAffx.25317.1.S1_at--566--5991Chr03:17827619..17827988 (25 bp)
GAGACCGAACAGCTTTGCTTCGTGT
LOC_Os03g31370
OsAffx.25317.1.S1_at--155--5831Chr03:17827621..17827990 (25 bp)
GACCGAACAGCTTTGCTTCGTGTCA
LOC_Os03g31370
OsAffx.25317.1.S1_at--285--24916Chr12:11430369..11430390 (22 bp)
AACAGCTTTGCTTCGTGTCACTCTA
NONE
OsAffx.25317.1.S1_at--21--106320Chr12:15324557..15324581 (25 bp)
TTCGTGTCACTCTACCCTTATATTA
NONE
OsAffx.25317.1.S1_at--1046--39913Chr12:11430379..11430403 (25 bp)
CGTGTCACTCTACCCTTATATTATA
NONE
OsAffx.25317.1.S1_at--912--70918Chr12:10148770..10148793 (24 bp)
GTCACTCTACCCTTATATTATATTT
NONE
Target Sequence 
GCGGCAGTGATGGTAGGGTTTGTTTTAGGGTTTCTTTTAGTGGGCTTATTGGGCTTCCTAGGCCTATTGGGCCAAAATTT
CGGTCATTTCGGTTAATTCGGTTAACCGAGCCCAATAACCGAAATGACCGAAATAAATTCGATCTTCTGAGGGCTGAGAC
CGAACAGCTTTGCTTCGTGTCACTCTACCCTTATATTATATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis