Browse Element(s) Details


OsAffx.13141.1.S1_at

Description tigr:9631.m03083
TID=OsAffx.13141.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g313809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31320Os.49432.1.S1_at11/113+17805610..17808599RING zinc finger protein, putative, expressed
LOC_Os03g31340OsAffx.3380.1.S1_x_at11/113+17814086..17814383Protein transport protein SEC61 gamma subunit, putative
LOC_Os03g31340OsAffx.3380.1.S1_at11/113+17814086..17814383Protein transport protein SEC61 gamma subunit, putative
LOC_Os03g31360Os.8013.1.S1_at11/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31360Os.12807.2.S1_x_at2/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31360OsAffx.27508.71.S1_s_at1/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31370OsAffx.25317.1.S1_at10/113+17827085..17828044hypothetical protein
LOC_Os03g31370OsAffx.26847.1.S1_x_at1/113+17827085..17828044hypothetical protein
LOC_Os03g31380OsAffx.13141.1.S1_at9/113+17832791..17835173hypothetical protein
LOC_Os03g31390OsAffx.25318.1.S1_at11/113+17837820..17838547hypothetical protein
LOC_Os03g31400Os.10677.2.S1_at11/113+17839850..17846915U-box domain containing protein, expressed
LOC_Os03g31400Os.10677.1.A1_at11/113+17839850..17846915U-box domain containing protein, expressed
LOC_Os03g31410Os.51453.1.S1_x_at6/113+17848145..17848436hypothetical protein
LOC_Os03g31430Os.54400.1.S1_at10/113+17857604..17867420Terpene synthase, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13141.1.S1_at--819--4051Chr03:17832880..17832904 (25 bp)
CGATGCGGGCGCTCGTGCAAGAGAG
LOC_Os03g31380
OsAffx.13141.1.S1_at--53--4492Chr03:17832942..17832966 (25 bp)
GCCGGCGGAGCGAGATGCGCGATGT
LOC_Os03g31380
OsAffx.13141.1.S1_at--1038--8071Chr03:17832972..17832996 (25 bp)
GGAGCGATGCAATGGGCCCGGCGGA
LOC_Os03g31380
OsAffx.13141.1.S1_at--169--791Chr03:17832983..17833007 (25 bp)
ATGGGCCCGGCGGAGCGAGATGCGG
LOC_Os03g31380
OsAffx.13141.1.S1_at--255--651Chr03:17833018..17833042 (25 bp)
ATGCAGGATGCGGTGTCGATTGAAC
LOC_Os03g31380
OsAffx.13141.1.S1_at--509--6351Chr03:17833024..17833048 (25 bp)
GATGCGGTGTCGATTGAACGGTTAT
LOC_Os03g31380
OsAffx.13141.1.S1_at--1135--3951Chr03:17833028..17833052 (25 bp)
CGGTGTCGATTGAACGGTTATGGAA
LOC_Os03g31380
OsAffx.13141.1.S1_at--649--5532Chr03:17833050..17833074 (25 bp)
GAAAAACTGATGACGTGGAAGCACT
LOC_Os03g31380
OsAffx.13141.1.S1_at--633--6311Chr03:17833058..17833082 (25 bp)
GATGACGTGGAAGCACTAGAAGCAG
LOC_Os03g31380
OsAffx.13141.1.S1_at--198--5391NONE
GAAGCAGAAAATTCCAGTGGCCCGT
NONE
OsAffx.13141.1.S1_at--4--5511NONE
GAAAATTCCAGTGGCCCGTCGTCTT
NONE
Target Sequence 
CGATGCGGGCGCTCGTGCAAGAGAGGAGCGATGCGGTGGGGAGCAATCCGGTGGGGTGTGGAGCCGGCGGAGCGAGATGC
GCGATGTGGTGGGGAGCGATGCAATGGGCCCGGCGGAGCGAGATGCGGGACGGTGCGGATGCAGGATGCGGTGTCGATTG
AACGGTTATGGAAAAACTGATGACGTGGAAGCACTAGAAGCAGAAAATTCCAGTGGCCCGTCGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis