Browse Element(s) Details


Os.8013.1.S1_at

Description gb:M28159.1
DB_XREF= gi:556400
GEN=Gt22
TID=Os.8013.1
CNT=102
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.8013 (NCBI UniGene Cluster)
DEF=Oryza sativa glutelin 1 (Gt22) mRNA, complete cds.
PROD=glutelin
FL= gb:AK107271.1 gb:M28159.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3136011/11Glutelin type-A 3 precursor, putative, expressed
LOC_Os01g556303/11Glutelin type-A 3 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31300Os.7626.1.S1_at11/113+17787104..17794190Chaperone clpB 1, putative, expressed
LOC_Os03g31310Os.11688.1.S1_at11/113+17794911..17799265circadian clock coupling factor, putative, expressed
LOC_Os03g31320Os.49432.1.S1_at11/113+17805610..17808599RING zinc finger protein, putative, expressed
LOC_Os03g31340OsAffx.3380.1.S1_x_at11/113+17814086..17814383Protein transport protein SEC61 gamma subunit, putative
LOC_Os03g31340OsAffx.3380.1.S1_at11/113+17814086..17814383Protein transport protein SEC61 gamma subunit, putative
LOC_Os03g31360Os.8013.1.S1_at11/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31360Os.12807.2.S1_x_at2/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31360OsAffx.27508.71.S1_s_at1/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31370OsAffx.25317.1.S1_at10/113+17827085..17828044hypothetical protein
LOC_Os03g31370OsAffx.26847.1.S1_x_at1/113+17827085..17828044hypothetical protein
LOC_Os03g31380OsAffx.13141.1.S1_at9/113+17832791..17835173hypothetical protein
LOC_Os03g31390OsAffx.25318.1.S1_at11/113+17837820..17838547hypothetical protein
LOC_Os03g31400Os.10677.2.S1_at11/113+17839850..17846915U-box domain containing protein, expressed
LOC_Os03g31400Os.10677.1.A1_at11/113+17839850..17846915U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8013.1.S1_at--438--5312Chr03:17820404..17820428 (25 bp)
GAAGGATCACATATCTAAATGGCCA
LOC_Os03g31360
Os.8013.1.S1_at--679--4872Chr03:17820700..17820719 (20 bp)
GCTTTTAATTATACCACAACACCAT
LOC_Os03g31360
Os.8013.1.S1_at--375--312Chr03:17820705..17820729 (25 bp)
ATACCACAACACCATGTAGTCATTA
LOC_Os03g31360
Os.8013.1.S1_at--829--6931Chr03:17820720..17820744 (25 bp)
GTAGTCATTAAAAAGGCACAAAGGG
LOC_Os03g31360
Os.8013.1.S1_at--288--3311Chr03:17820736..17820760 (25 bp)
CACAAAGGGAAGGATGCTCATATAT
LOC_Os03g31360
Os.8013.1.S1_at--572--5311Chr03:17820744..17820768 (25 bp)
GAAGGATGCTCATATATTGCATTGA
LOC_Os03g31360
Os.8013.1.S1_at--519--51Chr03:17820759..17820783 (25 bp)
ATTGCATTGAAAACCAACCCTGACT
LOC_Os03g31360
Os.8013.1.S1_at--820--11Chr03:17820764..17820788 (25 bp)
ATTGAAAACCAACCCTGACTCCATG
LOC_Os03g31360
Os.8013.1.S1_at--1085--2591Chr03:17820774..17820798 (25 bp)
AACCCTGACTCCATGGTTAGCCACA
LOC_Os03g31360
Os.8013.1.S1_at--616--9231Chr03:17820783..17820807 (25 bp)
TCCATGGTTAGCCACATGGCAGGAA
LOC_Os03g31360
Os.8013.1.S1_at--112--4591Chr03:17820823..17820847 (25 bp)
GCGCACTTCCTGACGATGTTGTAGC
LOC_Os03g31360
Target Sequence 
GAAGGATCACATATCTAAATGGCCAAAAGTTCCCCATTCTTAATCTTGTACAGATGAGTNCCGTTAAAGTAAATTTATAT
CAGAACGCACTCCTTTCACCTTTTTGGAACANTCAACGCTCATAGTGTNCGNTGTNATATTACTCAAGGTNCGTGCCCGA
GTTCAAGTCGNTCAACAANNCAATGGAAAGACANGTGTTCGATGGAGAGCTCCNGTCGTGGNCAGCTTTTAATTATACCA
CAACACCATGTAGTCATTAAAAAGGCACAAAGGGAAGGATGCTCATATATTGCATTGAAAACCAACCCTGACTCCATGGT
TAGCCACATGGCAGGAAAGAATTCCATCTTCCGCGCACTTCCTGACGATGTTGTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis