Browse Element(s) Details


Os.54400.1.S1_at

Description gb:AK103908.1
DB_XREF= gi:32989117
TID=Os.54400.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033150O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150O11, full insert sequence.
FL= gb:AK103908.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3143010/11Terpene synthase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31380OsAffx.13141.1.S1_at9/113+17832791..17835173hypothetical protein
LOC_Os03g31390OsAffx.25318.1.S1_at11/113+17837820..17838547hypothetical protein
LOC_Os03g31400Os.10677.2.S1_at11/113+17839850..17846915U-box domain containing protein, expressed
LOC_Os03g31400Os.10677.1.A1_at11/113+17839850..17846915U-box domain containing protein, expressed
LOC_Os03g31410Os.51453.1.S1_x_at6/113+17848145..17848436hypothetical protein
LOC_Os03g31430Os.54400.1.S1_at10/113+17857604..17867420Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os03g31440OsAffx.25320.1.S1_at10/113+17869807..17871282hypothetical protein
LOC_Os03g31446OsAffx.25321.1.S1_at11/113+17878133..17881237hypothetical protein
LOC_Os03g31452NANA3+17883289..17884514hypothetical protein
LOC_Os03g31460OsAffx.25322.1.S1_at10/113+17885829..17887114formin homology 2 domain-containing protein, putative
LOC_Os03g31480Os.57306.1.S1_at11/113+17889678..17890689Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54400.1.S1_at--448--7931Chr03:17858404..17858428 (25 bp)
GGATTCATGTATTGTTTCTCGACTA
LOC_Os03g31430
Os.54400.1.S1_at--626--8811NONE
TGTTGCTCATGCGTTTGAGACCGAA
NONE
Os.54400.1.S1_at--325--8171Chr03:17858100..17858124 (25 bp)
GGAACAATGTTGCTACCGCTGTAAC
LOC_Os03g31430
Os.54400.1.S1_at--1075--2231Chr03:17857975..17857999 (25 bp)
AAATTGACCTCAATTCCGTCTTCCT
LOC_Os03g31430
Os.54400.1.S1_at--81--7151Chr03:17857958..17857982 (25 bp)
GTCTTCCTTGCTTATCCAGGTTATT
LOC_Os03g31430
Os.54400.1.S1_at--31--7891Chr03:17857940..17857964 (25 bp)
GGTTATTAACCTTGCACGCATGATG
LOC_Os03g31430
Os.54400.1.S1_at--412--1011Chr03:17857824..17857848 (25 bp)
AGGTTTCCATCATATGACTTCGCTT
LOC_Os03g31430
Os.54400.1.S1_at--315--3051Chr03:17857763..17857787 (25 bp)
AATCGTGTATCCAAGCTTGCTTCGG
LOC_Os03g31430
Os.54400.1.S1_at--738--9431Chr03:17857742..17857766 (25 bp)
TCGGATGATCCTATGTAAGCAGCTC
LOC_Os03g31430
Os.54400.1.S1_at--782--71Chr03:17857717..17857741 (25 bp)
ATTGCTGCTTTATTGTCATTTTCCT
LOC_Os03g31430
Os.54400.1.S1_at--324--191Chr03:17857669..17857693 (25 bp)
ATTTCAATCTCGACATTGCTGCCTT
LOC_Os03g31430
Target Sequence 
GGATTCATGTATTGTTTCTCGACTAATGGATGACATTGTTGCTCATGCGTTTGAGACCGAAAGGAACAATGTTGCTACCG
CTGTAACTTGCTATATGAAAGAGTATGACAGCACAAAGGAGGAGGCCATTAAAGCACTGTGGAATGATGTGGAAAATGCA
TGGAAAGATATGAACGAGGAGTACCTAAAATTGACCTCAATTCCGTCTTCCTTGCTTATCCAGGTTATTAACCTTGCACG
CATGATGGAAACAATGTACAAGAAAATTGATGGATATACTGATTCTGCAATACTGAAAGAATGGATATCCTTGTTGCTTG
TTCAGCCAATAACACTCTAGGTTTCCATCATATGACTTCGCTTTAATTTGATTTTGATCAGAGTGTCTCTATTATGAATA
ATCGTGTATCCAAGCTTGCTTCGGATGATCCTATGTAAGCAGCTCATTGCTGCTTTATTGTCATTTTCCTTGTAGTGATG
TTTGTATTTCTTCATTTCAATCTCGACATTGCTGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis