Browse Element(s) Details


OsAffx.25320.1.S1_at

Description tigr:9631.m03089
TID=OsAffx.25320.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3144010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31400Os.10677.2.S1_at11/113+17839850..17846915U-box domain containing protein, expressed
LOC_Os03g31400Os.10677.1.A1_at11/113+17839850..17846915U-box domain containing protein, expressed
LOC_Os03g31410Os.51453.1.S1_x_at6/113+17848145..17848436hypothetical protein
LOC_Os03g31430Os.54400.1.S1_at10/113+17857604..17867420Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os03g31440OsAffx.25320.1.S1_at10/113+17869807..17871282hypothetical protein
LOC_Os03g31446OsAffx.25321.1.S1_at11/113+17878133..17881237hypothetical protein
LOC_Os03g31452NANA3+17883289..17884514hypothetical protein
LOC_Os03g31460OsAffx.25322.1.S1_at10/113+17885829..17887114formin homology 2 domain-containing protein, putative
LOC_Os03g31480Os.57306.1.S1_at11/113+17889678..17890689Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g31490OsAffx.13142.1.S1_s_at11/113+17894565..17897414expressed protein
LOC_Os03g31490Os.48138.1.S1_at11/113+17894565..17897414expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25320.1.S1_at--1137--6511Chr03:17871216..17871240 (25 bp)
GATTTAAACTTCTCTTCATGGCCCC
LOC_Os03g31440
OsAffx.25320.1.S1_at--544--5231Chr03:17871136..17871160 (25 bp)
GAATAGATCGTTCTCCACTTCAGAT
LOC_Os03g31440
OsAffx.25320.1.S1_at--745--7771Chr03:17871064..17871088 (25 bp)
GGTGCTCTCATCGTGGCATGCAGTA
LOC_Os03g31440
OsAffx.25320.1.S1_at--212--5031Chr03:17871045..17871069 (25 bp)
GCAGTACTACAATATCCCGTTCAGA
LOC_Os03g31440
OsAffx.25320.1.S1_at--1077--10431Chr03:17871009..17871033 (25 bp)
TTAGCTTTGGCTTGTCAGATCAGGA
LOC_Os03g31440
OsAffx.25320.1.S1_at--503--3711Chr03:17870979..17871003 (25 bp)
CTAGCTTTGGCTTGTCAGATCAGGA
LOC_Os03g31440
OsAffx.25320.1.S1_at--614--10791Chr03:17870937..17870961 (25 bp)
TTGTTCAATCAGATCGCTTCCGATG
LOC_Os03g31440
OsAffx.25320.1.S1_at--401--10031Chr03:17870855..17870879 (25 bp)
TAGAGCCAGGGCTTAGCGCGCTTAC
LOC_Os03g31440
OsAffx.25320.1.S1_at--976--4551NONE
GCGCTTACTGCGAGAGGTGCCAACT
NONE
OsAffx.25320.1.S1_at--978--5451Chr03:17869875..17869899 (25 bp)
GAACGGGCACTAGGACACCAGAGCA
LOC_Os03g31440
OsAffx.25320.1.S1_at--576--1531Chr03:17869854..17869878 (25 bp)
AGCAGGGTCACCAATCACGACAGGT
LOC_Os03g31440
Target Sequence 
GATTTAAACTTCTCTTCATGGCCCCAGACGGATGAAAATGGATTTGGGAATGTCCTGATAGGTTGGGCTAAGGTGAATGT
GAATAGATCGTTCTCCACTTCAGATGGTGCTGCTGGTATTGGTGTGGTCATTCGGGACCATGATGGTTCATCGGTGCTCT
CATCGTGGCATGCAGTACTACAATATCCCGTTCAGAGAATGTGGAAGTTAGCTTTGGCTTGTCAGATCAGGATGAAGCTA
GCTTTGGCTTGTCAGATCAGGATGTCACTATGGAGTATTTTGTTCAATCAGATCGCTTCCGATGATGCAAGTGCTGACAT
CAACACGGGAAAATCGATCTTGATGGGGCGCAGTAATTGCATAGAGCCAGGGCTTAGCGCGCTTACTGCGAGAGGTGCCA
ACTACGAACGGGCACTAGGACACCAGAGCAGGGTCACCAATCACGACAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis