Browse Element(s) Details


OsAffx.25322.1.S1_at

Description tigr:9631.m03091
TID=OsAffx.25322.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3146010/11formin homology 2 domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31430Os.54400.1.S1_at10/113+17857604..17867420Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os03g31440OsAffx.25320.1.S1_at10/113+17869807..17871282hypothetical protein
LOC_Os03g31446OsAffx.25321.1.S1_at11/113+17878133..17881237hypothetical protein
LOC_Os03g31452NANA3+17883289..17884514hypothetical protein
LOC_Os03g31460OsAffx.25322.1.S1_at10/113+17885829..17887114formin homology 2 domain-containing protein, putative
LOC_Os03g31480Os.57306.1.S1_at11/113+17889678..17890689Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g31490OsAffx.13142.1.S1_s_at11/113+17894565..17897414expressed protein
LOC_Os03g31490Os.48138.1.S1_at11/113+17894565..17897414expressed protein
LOC_Os03g31500NANA3+17898679..17898978hypothetical protein
LOC_Os03g31510Os.16142.1.S1_at11/113+17904171..17904970Cystatin, putative, expressed
LOC_Os03g31520NANA3+17911067..17913051hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25322.1.S1_at--546--1751Chr03:17886389..17886413 (25 bp)
ACCTGCAGTACGTGGCAAGGCTGAG
LOC_Os03g31460
OsAffx.25322.1.S1_at--809--6191Chr03:17886352..17886376 (25 bp)
GAGGCATGGACCACCAACACCATCG
LOC_Os03g31460
OsAffx.25322.1.S1_at--901--7131Chr03:17886318..17886342 (25 bp)
GTCTTGGACTGCCTCATCCTCAGAC
LOC_Os03g31460
OsAffx.25322.1.S1_at--944--3531Chr03:17886304..17886328 (25 bp)
CATCCTCAGACCTGTTCCAGATTTT
LOC_Os03g31460
OsAffx.25322.1.S1_at--412--651Chr03:17886265..17886289 (25 bp)
ATGCAGACCGGTTGTCCGAGTTCAT
LOC_Os03g31460
OsAffx.25322.1.S1_at--338--4631Chr03:17886209..17886233 (25 bp)
GCGATCGGGCCGATGATGCTTCACC
LOC_Os03g31460
OsAffx.25322.1.S1_at--861--6291Chr03:17886198..17886222 (25 bp)
GATGATGCTTCACCCAAGATCCTGT
LOC_Os03g31460
OsAffx.25322.1.S1_at--827--2791Chr03:17886183..17886207 (25 bp)
AAGATCCTGTTCAGCACACCGAGGA
LOC_Os03g31460
OsAffx.25322.1.S1_at--866--5111Chr03:17886170..17886194 (25 bp)
GCACACCGAGGATCAAGCAGCACTT
LOC_Os03g31460
OsAffx.25322.1.S1_at--745--6451Chr03:17886160..17886184 (25 bp)
GATCAAGCAGCACTTCAGGCAGTAC
LOC_Os03g31460
OsAffx.25322.1.S1_at--561--7031NONE
GTACAACCAGGTGGACCAAATATGG
NONE
Target Sequence 
ACCTGCAGTACGTGGCAAGGCTGAGGGGGATGACGACGAGGCATGGACCACCAACACCATCGCCCCTCCTCGTCTTGGAC
TGCCTCATCCTCAGACCTGTTCCAGATTTTGATGGCAATGGGGGATGCAGACCGGTTGTCCGAGTTCATGGTCGCCGCGA
CGCCGCCGCCGACTACGACGGCGATCGGGCCGATGATGCTTCACCCAAGATCCTGTTCAGCACACCGAGGATCAAGCAGC
ACTTCAGGCAGTACAACCAGGTGGACCAAATATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis