Browse Element(s) Details


Os.57306.1.S1_at

Description gb:AK111273.1
DB_XREF= gi:32996482
TID=Os.57306.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-G03, full insert sequence.
FL= gb:AK111273.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3148011/11Alpha-expansin 11 precursor, putative, expressed
LOC_Os04g326901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31430Os.54400.1.S1_at10/113+17857604..17867420Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os03g31440OsAffx.25320.1.S1_at10/113+17869807..17871282hypothetical protein
LOC_Os03g31446OsAffx.25321.1.S1_at11/113+17878133..17881237hypothetical protein
LOC_Os03g31452NANA3+17883289..17884514hypothetical protein
LOC_Os03g31460OsAffx.25322.1.S1_at10/113+17885829..17887114formin homology 2 domain-containing protein, putative
LOC_Os03g31480Os.57306.1.S1_at11/113+17889678..17890689Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g31490OsAffx.13142.1.S1_s_at11/113+17894565..17897414expressed protein
LOC_Os03g31490Os.48138.1.S1_at11/113+17894565..17897414expressed protein
LOC_Os03g31500NANA3+17898679..17898978hypothetical protein
LOC_Os03g31510Os.16142.1.S1_at11/113+17904171..17904970Cystatin, putative, expressed
LOC_Os03g31520NANA3+17911067..17913051hypothetical protein
LOC_Os03g31530NANA3+17914440..17918701retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57306.1.S1_at--1115--2471Chr03:17890329..17890353 (25 bp)
AACACCGGGTGGATCCAGATGTCGC
LOC_Os03g31480
Os.57306.1.S1_at--1--1191Chr03:17890435..17890459 (25 bp)
AGTACCTGCAGTTCCAGGACGTGGC
LOC_Os03g31480
Os.57306.1.S1_at--936--5011Chr03:17890502..17890526 (25 bp)
GCAGTTCGACTACTAGATGATGAGT
LOC_Os03g31480
Os.57306.1.S1_at--39--811Chr03:17890530..17890554 (25 bp)
ATGGTTCGTCATTTTAACGGAGCTT
LOC_Os03g31480
Os.57306.1.S1_at--900--2571Chr03:17890545..17890569 (25 bp)
AACGGAGCTTAGCTAGCAATAGCAA
LOC_Os03g31480
Os.57306.1.S1_at--1147--271Chr03:17890563..17890587 (25 bp)
ATAGCAAAGCTGTACTTCCTTCCAC
LOC_Os03g31480
Os.57306.1.S1_at--34--10431Chr03:17890578..17890602 (25 bp)
TTCCTTCCACCGCTTATTCCTTTAT
LOC_Os03g31480
Os.57306.1.S1_at--676--10411Chr03:17890591..17890615 (25 bp)
TTATTCCTTTATTCCTGTGCTGCTC
LOC_Os03g31480
Os.57306.1.S1_at--485--3891Chr03:17890605..17890629 (25 bp)
CTGTGCTGCTCGATCGTCACACGAT
LOC_Os03g31480
Os.57306.1.S1_at--995--8831Chr03:17890636..17890660 (25 bp)
TGATAATCTGTTTCCTAAATTTTTC
LOC_Os03g31480
Os.57306.1.S1_at--422--10352Chr03:17890655..17890679 (25 bp)
TTTTTCCTTGATTCTATTGCCAATA
LOC_Os03g31480
Target Sequence 
AACACCGGGTGGATCCAGATGTCGCGGAACTGGGGCGCCAACTGGCAGTCGCTCGCCGGGCTCGCCGGCCAGGCGCTCAG
CTTCGCCGTCACCACCACCGGCGGCCAGTACCTGCAGTTCCAGGACGTGGCGCCGGCGTGGTGGCAGTTCGGCCAGACCT
TCTCCACCTACCAGCAGTTCGACTACTAGATGATGAGTAAAATGGTTCGTCATTTTAACGGAGCTTAGCTAGCAATAGCA
AAGCTGTACTTCCTTCCACCGCTTATTCCTTTATTCCTGTGCTGCTCGATCGTCACACGATCGATGCTGATAATCTGTTT
CCTAAATTTTTCCTTGATTCTATTGCCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis