Browse Element(s) Details


OsAffx.13142.1.S1_s_at

Description tigr:9631.m03094
TID=OsAffx.13142.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3149011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31440OsAffx.25320.1.S1_at10/113+17869807..17871282hypothetical protein
LOC_Os03g31446OsAffx.25321.1.S1_at11/113+17878133..17881237hypothetical protein
LOC_Os03g31452NANA3+17883289..17884514hypothetical protein
LOC_Os03g31460OsAffx.25322.1.S1_at10/113+17885829..17887114formin homology 2 domain-containing protein, putative
LOC_Os03g31480Os.57306.1.S1_at11/113+17889678..17890689Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g31490OsAffx.13142.1.S1_s_at11/113+17894565..17897414expressed protein
LOC_Os03g31490Os.48138.1.S1_at11/113+17894565..17897414expressed protein
LOC_Os03g31500NANA3+17898679..17898978hypothetical protein
LOC_Os03g31510Os.16142.1.S1_at11/113+17904171..17904970Cystatin, putative, expressed
LOC_Os03g31520NANA3+17911067..17913051hypothetical protein
LOC_Os03g31530NANA3+17914440..17918701retrotransposon protein, putative, unclassified
LOC_Os03g31540OsAffx.25325.1.S1_at11/113+17922231..17923432hypothetical protein
LOC_Os03g31540OsAffx.5106.1.S1_at2/113+17922231..17923432hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13142.1.S1_s_at--506--2991Chr03:17895307..17895331 (25 bp)
AATGTATGGCCGCTCTATTGAATTC
LOC_Os03g31490
OsAffx.13142.1.S1_s_at--221--10231Chr03:17895322..17895346 (25 bp)
TATTGAATTCTTGGAGGCTGCACTC
LOC_Os03g31490
OsAffx.13142.1.S1_s_at--42--8011Chr03:17895334..17895358 (25 bp)
GGAGGCTGCACTCACAATTATTCGC
LOC_Os03g31490
OsAffx.13142.1.S1_s_at--608--9211Chr03:17896418..17896442 (25 bp)
TCCAAATTTGGCTTGCAATGGCGTA
LOC_Os03g31490
OsAffx.13142.1.S1_s_at--934--6191Chr03:17896455..17896479 (25 bp)
GAGGCACAAGGATTGCATTGCACTG
LOC_Os03g31490
OsAffx.13142.1.S1_s_at--29--6031Chr03:17896492..17896516 (25 bp)
GAGAGTACACATCCAATGATCAGCA
LOC_Os03g31490
OsAffx.13142.1.S1_s_at--673--2991Chr03:17896506..17896530 (25 bp)
AATGATCAGCATTAGGCGGCAGGCA
LOC_Os03g31490
OsAffx.13142.1.S1_s_at--562--1631Chr03:17896530..17896554 (25 bp)
AGCGGAACTCCGGTACATTTCTGAG
LOC_Os03g31490
OsAffx.13142.1.S1_s_at--971--191Chr03:17896546..17896570 (25 bp)
ATTTCTGAGGCACCCAAGCTGAAGA
LOC_Os03g31490
OsAffx.13142.1.S1_s_at--955--8611Chr03:17896961..17896985 (25 bp)
TGGTGACTTATCTTTCTTGCGACCT
LOC_Os03g31490
OsAffx.13142.1.S1_s_at--96--5891Chr03:17897003..17897027 (25 bp)
GAGCGCATGGGTGATTGTTACTTTA
LOC_Os03g31490
Target Sequence 
AATGTATGGCCGCTCTATTGAATTCTTGGAGGCTGCACTCACAATTATTCGCCCTTCATCGCTCCTTGGTGGGGAGATCC
AAATTTGGCTTGCAATGGCGTATGAGGCCAATAGGAGGCACAAGGATTGCATTGCACTGTACAAAGAGTTGGAGAGTACA
CATCCAATGATCAGCATTAGGCGGCAGGCAGCGGAACTCCGGTACATTTCTGAGGCACCCAAGCTGAAGATCTCCAATGA
CGAGGTGGTCACAATACCACAAATTGGATCTAGTTGGGATTGGTACGCTGGAACATGGAGTGACAAAATCAAGGAGCAGG
AGGACAAGAAAAGGAAAATGGTGGCTGCCAGCAGCCAAGTTGAACCTTCGCCAAATATCTTTGGTGACTTATCTTTCTTG
CGACCTCCAACGGAATGGACAAGGAGCGCATGGGTGATTGTTACTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13142.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis