Browse Element(s) Details


OsAffx.25325.1.S1_at

Description tigr:9631.m03099
TID=OsAffx.25325.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3154011/11hypothetical protein
LOC_Os02g278801/11EF hand family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31490OsAffx.13142.1.S1_s_at11/113+17894565..17897414expressed protein
LOC_Os03g31490Os.48138.1.S1_at11/113+17894565..17897414expressed protein
LOC_Os03g31500NANA3+17898679..17898978hypothetical protein
LOC_Os03g31510Os.16142.1.S1_at11/113+17904171..17904970Cystatin, putative, expressed
LOC_Os03g31520NANA3+17911067..17913051hypothetical protein
LOC_Os03g31530NANA3+17914440..17918701retrotransposon protein, putative, unclassified
LOC_Os03g31540OsAffx.25325.1.S1_at11/113+17922231..17923432hypothetical protein
LOC_Os03g31540OsAffx.5106.1.S1_at2/113+17922231..17923432hypothetical protein
LOC_Os03g31542Os.54774.1.S1_x_at2/113+17926746..17930362retrotransposon, putative, centromere-specific
LOC_Os03g31542Os.52447.1.S1_x_at1/113+17926746..17930362retrotransposon, putative, centromere-specific
LOC_Os03g31542Os.54774.1.S1_at1/113+17926746..17930362retrotransposon, putative, centromere-specific
LOC_Os03g31544OsAffx.25326.1.S1_at11/113+17931757..17932080hypothetical protein
LOC_Os03g31546NANA3+17938060..17938731hypothetical protein
LOC_Os03g31550Os.10786.1.S1_at11/113+17940519..17953383Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0019722biological_processcalcium-mediated signaling
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25325.1.S1_at--1008--9251Chr03:17922939..17922963 (25 bp)
TCCTCGTCGGCGGATTTGGGCCAGC
LOC_Os03g31540
OsAffx.25325.1.S1_at--805--4671Chr03:17922676..17922867 (25 bp)
GCGGTGACGACGAATTGTGGCTTTT
LOC_Os03g31540
OsAffx.25325.1.S1_at--372--5291Chr03:17922668..17922859 (25 bp)
GACGAATTGTGGCTTTTGGGTCCTT
LOC_Os03g31540
OsAffx.25325.1.S1_at--391--8972Chr03:17922606..17922630 (25 bp)
TGAAAAGCCTAACCAAACACATCCT
LOC_Os03g31540
OsAffx.25325.1.S1_at--976--9791Chr03:17922597..17922621 (25 bp)
TAACCAAACACATCCTTCTCATAGA
LOC_Os03g31540
OsAffx.25325.1.S1_at--251--2471Chr03:17922591..17922615 (25 bp)
AACACATCCTTCTCATAGAGGGTTG
LOC_Os03g31540
OsAffx.25325.1.S1_at--1152--9933Chr10:13713327..13713451 (24 bp)
TAGAGGGTTGAAAAGCCCAACCAAG
NONE
OsAffx.25325.1.S1_at--520--9251Chr03:17922394..17922418 (25 bp)
TCCTCTTCAAGAACGCCGGTCGATG
LOC_Os03g31540
OsAffx.25325.1.S1_at--482--9371Chr03:17922352..17922376 (25 bp)
TCGACGAGCGGGTAGCTCCGTGGGA
LOC_Os03g31540
OsAffx.25325.1.S1_at--1085--1911Chr03:17922275..17922299 (25 bp)
ACGGGAGCATGCAGCGGGTCTCCTC
LOC_Os03g31540
OsAffx.25325.1.S1_at--265--651Chr03:17922267..17922291 (25 bp)
ATGCAGCGGGTCTCCTCGCAGGAGC
LOC_Os03g31540
Target Sequence 
TCCTCGTCGGCGGATTTGGGCCAGCGCGGGACGAGAGGGGCGGCGGCGGCTCGTTGAGGAGGAGTGGCAGTGGCGGCGTC
TCGGCGAGGAGGAGCGGCGGTGACGACGAATTGTGGCTTTTGGGTCCTTTGGTTGGCTTTTGGCTTTTGCAAAAGCAAAA
GCAGGTTGAAAAGCCTAACCAAACACATCCTTCTCATAGAGGGTTGAAAAGCCCAACCAAGAAAACCGCCTTCGTCCTCC
TGCTCTCCCTTCTCTTCCTCGTCCACATCGCCATCTCCCACGCCCTCTTCTCCCCCATCGACTCCGATGACTCCAACGAC
TCCGGCACCCTCGCCCAGCGCTGCCTCGTCCTCCGTCTCGCCAACGACTGGCTCGCCCTCCTCTTCAAGAACGCCGGTCG
ATGGCGGCTGGTGGAGCGGATCGACGAGCGGGTAGCTCCGTGGGAGAGAGGCGAGGGGGCGAGGATTGGAGGGGGATTTG
GGGGGAGCGGCGAGGAGACGGGAGCATGCAGCGGGTCTCCTCGCAGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis