Browse Element(s) Details


OsAffx.25326.1.S1_at

Description tigr:9631.m03101
TID=OsAffx.25326.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3154411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31520NANA3+17911067..17913051hypothetical protein
LOC_Os03g31530NANA3+17914440..17918701retrotransposon protein, putative, unclassified
LOC_Os03g31540OsAffx.25325.1.S1_at11/113+17922231..17923432hypothetical protein
LOC_Os03g31540OsAffx.5106.1.S1_at2/113+17922231..17923432hypothetical protein
LOC_Os03g31542Os.54774.1.S1_x_at2/113+17926746..17930362retrotransposon, putative, centromere-specific
LOC_Os03g31542Os.52447.1.S1_x_at1/113+17926746..17930362retrotransposon, putative, centromere-specific
LOC_Os03g31542Os.54774.1.S1_at1/113+17926746..17930362retrotransposon, putative, centromere-specific
LOC_Os03g31544OsAffx.25326.1.S1_at11/113+17931757..17932080hypothetical protein
LOC_Os03g31546NANA3+17938060..17938731hypothetical protein
LOC_Os03g31550Os.10786.1.S1_at11/113+17940519..17953383Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25326.1.S1_at--847--2291Chr03:17931793..17931817 (25 bp)
AAATGGGTCTGCGAGCACCAGGGAA
LOC_Os03g31544
OsAffx.25326.1.S1_at--363--5331Chr03:17931815..17931839 (25 bp)
GAAGTGTGGCAGTCGGGCTTGAGGC
LOC_Os03g31544
OsAffx.25326.1.S1_at--1072--9131Chr03:17931862..17931886 (25 bp)
TGCGTCCACCGCGTGGTCGAAGCAG
LOC_Os03g31544
OsAffx.25326.1.S1_at--1131--9211Chr03:17931866..17931890 (25 bp)
TCCACCGCGTGGTCGAAGCAGCGCA
LOC_Os03g31544
OsAffx.25326.1.S1_at--451--1511Chr03:17931882..17931906 (25 bp)
AGCAGCGCAGGAGAAGAGGACCGGC
LOC_Os03g31544
OsAffx.25326.1.S1_at--21--1591Chr03:17931933..17931957 (25 bp)
AGCTCCGGTGGCGATCCTGCAAGGA
LOC_Os03g31544
OsAffx.25326.1.S1_at--379--3811Chr03:17931935..17931959 (25 bp)
CTCCGGTGGCGATCCTGCAAGGAAA
LOC_Os03g31544
OsAffx.25326.1.S1_at--663--8451Chr03:17931941..17931965 (25 bp)
TGGCGATCCTGCAAGGAAAGGGAAA
LOC_Os03g31544
OsAffx.25326.1.S1_at--1027--10231Chr03:17931978..17932002 (25 bp)
TTTGGTGAGTTTGGGACGGCGAGCT
LOC_Os03g31544
OsAffx.25326.1.S1_at--133--7231Chr03:17932007..17932031 (25 bp)
GTCGACGTGCCCCTCGATTGGAGAA
LOC_Os03g31544
OsAffx.25326.1.S1_at--217--1891Chr03:17932011..17932035 (25 bp)
ACGTGCCCCTCGATTGGAGAAGGTG
LOC_Os03g31544
Target Sequence 
AAATGGGTCTGCGAGCACCAGGGAAGTGTGGCAGTCGGGCTTGAGGCAGCCGGGAACGGCGGCACGACGTGCGTCCACCG
CGTGGTCGAAGCAGCGCAGGAGAAGAGGACCGGCGGCAAGGGGTCGCGCTCGCACCAGCGAGCTCCGGTGGCGATCCTGC
AAGGAAAGGGAAAGGAAGGGGGGCTTTTGGTGAGTTTGGGACGGCGAGCTCGACGTCGACGTGCCCCTCGATTGGAGAAG
GTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis