Browse Element(s) Details


Os.16142.1.S1_at

Description gb:AK102768.1
DB_XREF= gi:32987977
TID=Os.16142.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16142 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107F20, full insert sequence.
FL= gb:AK102768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3151011/11Cystatin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31446OsAffx.25321.1.S1_at11/113+17878133..17881237hypothetical protein
LOC_Os03g31452NANA3+17883289..17884514hypothetical protein
LOC_Os03g31460OsAffx.25322.1.S1_at10/113+17885829..17887114formin homology 2 domain-containing protein, putative
LOC_Os03g31480Os.57306.1.S1_at11/113+17889678..17890689Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g31490OsAffx.13142.1.S1_s_at11/113+17894565..17897414expressed protein
LOC_Os03g31490Os.48138.1.S1_at11/113+17894565..17897414expressed protein
LOC_Os03g31500NANA3+17898679..17898978hypothetical protein
LOC_Os03g31510Os.16142.1.S1_at11/113+17904171..17904970Cystatin, putative, expressed
LOC_Os03g31520NANA3+17911067..17913051hypothetical protein
LOC_Os03g31530NANA3+17914440..17918701retrotransposon protein, putative, unclassified
LOC_Os03g31540OsAffx.25325.1.S1_at11/113+17922231..17923432hypothetical protein
LOC_Os03g31540OsAffx.5106.1.S1_at2/113+17922231..17923432hypothetical protein
LOC_Os03g31542Os.54774.1.S1_x_at2/113+17926746..17930362retrotransposon, putative, centromere-specific
LOC_Os03g31542Os.52447.1.S1_x_at1/113+17926746..17930362retrotransposon, putative, centromere-specific
LOC_Os03g31542Os.54774.1.S1_at1/113+17926746..17930362retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0004869molecular_functioncysteine protease inhibitor activity
GO:0030234molecular_functionenzyme regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16142.1.S1_at--973--6971Chr03:17904633..17904657 (25 bp)
GTACGAGCAGTCGTGGACCAACACC
LOC_Os03g31510
Os.16142.1.S1_at--220--3811Chr03:17904704..17904728 (25 bp)
CTCCCTCCAGATCTATCTTATCTAT
LOC_Os03g31510
Os.16142.1.S1_at--313--10171Chr03:17904717..17904741 (25 bp)
TATCTTATCTATGTCTCTTCTGCTC
LOC_Os03g31510
Os.16142.1.S1_at--190--9111Chr03:17904737..17904761 (25 bp)
TGCTCCATCTCGATCAGCTGTTAAA
LOC_Os03g31510
Os.16142.1.S1_at--51--1591Chr03:17904752..17904776 (25 bp)
AGCTGTTAAATTTTCCCTGCCTAAT
LOC_Os03g31510
Os.16142.1.S1_at--864--691Chr03:17904819..17904843 (25 bp)
ATGAGCACAAGCTAAGTACCTGTAC
LOC_Os03g31510
Os.16142.1.S1_at--979--2831Chr03:17904832..17904856 (25 bp)
AAGTACCTGTACTTGTTCGGTCTGA
LOC_Os03g31510
Os.16142.1.S1_at--1092--7171Chr03:17904851..17904875 (25 bp)
GTCTGAGTTGTGTCCCCGTGTGTGC
LOC_Os03g31510
Os.16142.1.S1_at--814--7471Chr03:17904868..17904892 (25 bp)
GTGTGTGCGGTTCAATCTTTTGCAT
LOC_Os03g31510
Os.16142.1.S1_at--167--7071Chr03:17904893..17904917 (25 bp)
GTAAGACAGCGAGTCCACACTTGTA
LOC_Os03g31510
Os.16142.1.S1_at--265--7671Chr03:17904940..17904964 (25 bp)
GGGATTGGAATAATGGTGCCCATCT
LOC_Os03g31510
Target Sequence 
GTACGAGCAGTCGTGGACCAACACCCGCCAGCTCACCTCCTTCAAGCCCGCCGCCGCGCACTGATCCATCCCTCCCTCCA
GATCTATCTTATCTATGTCTCTTCTGCTCCATCTCGATCAGCTGTTAAATTTTCCCTGCCTAATCTCTCTCTGTTAATCA
CACATCTCATGTAATTCTCATGTATGATGAGCACAAGCTAAGTACCTGTACTTGTTCGGTCTGAGTTGTGTCCCCGTGTG
TGCGGTTCAATCTTTTGCATGTAAGACAGCGAGTCCACACTTGTAATGAATTAGCGAATAAAATGGTGGGATTGGAATAA
TGGTGCCCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis