Browse Element(s) Details


Os.48138.1.S1_at

Description gb:AK060233.1
DB_XREF= gi:32970251
TID=Os.48138.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.48138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-A11, full insert sequence.
FL= gb:AK060233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3149011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31440OsAffx.25320.1.S1_at10/113+17869807..17871282hypothetical protein
LOC_Os03g31446OsAffx.25321.1.S1_at11/113+17878133..17881237hypothetical protein
LOC_Os03g31452NANA3+17883289..17884514hypothetical protein
LOC_Os03g31460OsAffx.25322.1.S1_at10/113+17885829..17887114formin homology 2 domain-containing protein, putative
LOC_Os03g31480Os.57306.1.S1_at11/113+17889678..17890689Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g31490OsAffx.13142.1.S1_s_at11/113+17894565..17897414expressed protein
LOC_Os03g31490Os.48138.1.S1_at11/113+17894565..17897414expressed protein
LOC_Os03g31500NANA3+17898679..17898978hypothetical protein
LOC_Os03g31510Os.16142.1.S1_at11/113+17904171..17904970Cystatin, putative, expressed
LOC_Os03g31520NANA3+17911067..17913051hypothetical protein
LOC_Os03g31530NANA3+17914440..17918701retrotransposon protein, putative, unclassified
LOC_Os03g31540OsAffx.25325.1.S1_at11/113+17922231..17923432hypothetical protein
LOC_Os03g31540OsAffx.5106.1.S1_at2/113+17922231..17923432hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48138.1.S1_at--1050--1971Chr03:17897076..17897100 (25 bp)
ACTGCAACTATGAAAGAAGCTACTC
LOC_Os03g31490
Os.48138.1.S1_at--150--5411Chr03:17897091..17897115 (25 bp)
GAAGCTACTCCATTCTTGTATATGA
LOC_Os03g31490
Os.48138.1.S1_at--425--6271Chr03:17897117..17897141 (25 bp)
GATGTCTTGCTGGTAAGGAGGCAAC
LOC_Os03g31490
Os.48138.1.S1_at--453--3711Chr03:17897154..17897178 (25 bp)
CTAGCTGGGCGGATTTGGAGTTATA
LOC_Os03g31490
Os.48138.1.S1_at--473--8011Chr03:17897170..17897194 (25 bp)
GGAGTTATACTTATGACTTACTACT
LOC_Os03g31490
Os.48138.1.S1_at--220--9471Chr03:17897209..17897233 (25 bp)
TCTGGATCGTCTGCAACGGTGCAGC
LOC_Os03g31490
Os.48138.1.S1_at--828--7771Chr03:17897226..17897250 (25 bp)
GGTGCAGCCTGCAGAGATTCACTGT
LOC_Os03g31490
Os.48138.1.S1_at--240--3431Chr03:17897237..17897261 (25 bp)
CAGAGATTCACTGTGTGGACGGTAA
LOC_Os03g31490
Os.48138.1.S1_at--688--8091Chr03:17897253..17897277 (25 bp)
GGACGGTAATTTGAATCGCACGCTA
LOC_Os03g31490
Os.48138.1.S1_at--1115--5251Chr03:17897265..17897289 (25 bp)
GAATCGCACGCTATAGCTGTAGCAA
LOC_Os03g31490
Os.48138.1.S1_at--746--3191Chr03:17897287..17897311 (25 bp)
CAATGCGTTGTGGAAACAGTTTACA
LOC_Os03g31490
Target Sequence 
ACTGCAACTATGAAAGAAGCTACTCCATTCTTGTATATGAAGATGTCTTGCTGGTAAGGAGGCAACAATTGAAGGAAGCT
AGCTGGGCGGATTTGGAGTTATACTTATGACTTACTACTAGATTGAAGGGAGATCTGGATCGTCTGCAACGGTGCAGCCT
GCAGAGATTCACTGTGTGGACGGTAATTTGAATCGCACGCTATAGCTGTAGCAATGCGTTGTGGAAACAGTTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis