Browse Element(s) Details


OsAffx.5115.1.S1_at

Description tigr:9634.m04417
TID=OsAffx.5115.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4547011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45430Os.4719.1.S1_at11/116+27465368..27468861LEM3 family/CDC50 family protein, expressed
LOC_Os06g45440Os.17920.1.S1_at11/116+27468979..27470808haloacid dehalogenase-like hydrolase family protein, expressed
LOC_Os06g45450OsAffx.28117.1.S1_at11/116+27472218..27473452hypothetical protein
LOC_Os06g45460OsAffx.5114.1.S1_at11/116+27479085..27480390F-box domain containing protein
LOC_Os06g45470OsAffx.5115.1.S1_at11/116+27492243..27492452hypothetical protein
LOC_Os06g45480Os.11403.1.S1_at11/116+27494298..27498534peptidase M20/M25/M40 family protein, putative, expressed
LOC_Os06g45490OsAffx.28118.1.S1_at8/116+27504349..27505654hypothetical protein
LOC_Os06g45490OsAffx.25317.1.S1_at1/116+27504349..27505654hypothetical protein
LOC_Os06g45500NANA6+27516402..27522535Copper-transporting ATPase RAN1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5115.1.S1_at--573--8191Chr06:27492390..27492414 (25 bp)
GGAAGAGAAGAGGACACTACCACCA
LOC_Os06g45470
OsAffx.5115.1.S1_at--1152--5351Chr06:27492384..27492408 (25 bp)
GAAGAGGACACTACCACCACGGACA
LOC_Os06g45470
OsAffx.5115.1.S1_at--289--6071Chr06:27492354..27492378 (25 bp)
GAGTTCATCACTACATCTGCGGATG
LOC_Os06g45470
OsAffx.5115.1.S1_at--272--391Chr06:27492348..27492372 (25 bp)
ATCACTACATCTGCGGATGCTGCTC
LOC_Os06g45470
OsAffx.5115.1.S1_at--97--6351Chr06:27492333..27492357 (25 bp)
GATGCTGCTCACCTTGATTTGCTCA
LOC_Os06g45470
OsAffx.5115.1.S1_at--645--9671Chr06:27492325..27492349 (25 bp)
TCACCTTGATTTGCTCATTGCCAGG
LOC_Os06g45470
OsAffx.5115.1.S1_at--797--8831Chr06:27492319..27492343 (25 bp)
TGATTTGCTCATTGCCAGGTGGCGC
LOC_Os06g45470
OsAffx.5115.1.S1_at--529--10271Chr06:27492316..27492340 (25 bp)
TTTGCTCATTGCCAGGTGGCGCTGC
LOC_Os06g45470
OsAffx.5115.1.S1_at--27--4791Chr06:27492296..27492320 (25 bp)
GCTGCCTTGATCTGCACCATTGAGA
LOC_Os06g45470
OsAffx.5115.1.S1_at--108--6411Chr06:27492288..27492312 (25 bp)
GATCTGCACCATTGAGATTGCTGTT
LOC_Os06g45470
OsAffx.5115.1.S1_at--131--5091Chr06:27492283..27492307 (25 bp)
GCACCATTGAGATTGCTGTTCAATC
LOC_Os06g45470
Target Sequence 
GGAAGAGAAGAGGACACTACCACCACGGACACCGTCGAGTTCATCACTACATCTGCGGATGCTGCTCACCTTGATTTGCT
CATTGCCAGGTGGCGCTGCCTTGATCTGCACCATTGAGATTGCTGTTCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis