Browse Element(s) Details

Os.15065.1.S1_at

Description

gb:AK120722.1
DB_XREF= gi:37990345
TID=Os.15065.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002G19, full insert sequence.
FL= gb:AK120722.1 gb:AK058691.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g45370	11/11	fructose-1,6-bisphosphatase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g45350	Os.34343.1.S2_at	11/11	6	+	27411681..27416604	protein kinase, putative, expressed
LOC_Os06g45350	Os.34343.1.S1_a_at	11/11	6	+	27411681..27416604	protein kinase, putative, expressed
LOC_Os06g45350	Os.49575.1.S1_at	11/11	6	+	27411681..27416604	protein kinase, putative, expressed
LOC_Os06g45350	Os.34343.1.S2_s_at	11/11	6	+	27411681..27416604	protein kinase, putative, expressed
LOC_Os06g45360	Os.51301.1.S1_at	11/11	6	+	27418371..27426848	metallopeptidase family M24 containing protein, expressed
LOC_Os06g45360	Os.51301.1.S1_x_at	11/11	6	+	27418371..27426848	metallopeptidase family M24 containing protein, expressed
LOC_Os06g45370	Os.15065.1.S1_at	11/11	6	+	27427893..27430110	fructose-1,6-bisphosphatase family protein, expressed
LOC_Os06g45380	OsAffx.28116.1.S1_s_at	11/11	6	+	27432423..27440151	Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380	OsAffx.28116.1.S1_x_at	11/11	6	+	27432423..27440151	Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380	Os.17353.1.S1_at	10/11	6	+	27432423..27440151	Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380	Os.20764.1.S1_s_at	1/11	6	+	27432423..27440151	Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45390	OsAffx.15936.1.S1_at	10/11	6	+	27440488..27443852	expressed protein
LOC_Os06g45399	NA	NA	6	+	27445969..27446559	NA
LOC_Os06g45410	Os.50003.1.S1_at	11/11	6	+	27455060..27458560	myb family transcription factor-related protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0005975	biological_process	carbohydrate metabolism
GO:0005986	biological_process	sucrose biosynthesis
GO:0006000	biological_process	fructose metabolism
GO:0016051	biological_process	carbohydrate biosynthesis
GO:0019252	biological_process	starch biosynthesis
GO:0019253	biological_process	reductive pentose-phosphate cycle
GO:0042132	molecular_function	fructose-bisphosphatase activity
GO:0042578	molecular_function	phosphoric ester hydrolase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.15065.1.S1_at--1042--19	1	Chr06:27428401..27428425 (25 bp)	ATTTCCACCGGACGCTGATATACGG	LOC_Os06g45370
Os.15065.1.S1_at--567--347	1	Chr06:27428358..27428382 (25 bp)	CAGGGATCACCTTCGGTTGGTCTAT	LOC_Os06g45370
Os.15065.1.S1_at--1024--303	1	Chr06:27428268..27428292 (25 bp)	AATCCTCTCGATTCAGCCTGTGAAG	LOC_Os06g45370
Os.15065.1.S1_at--24--869	1	Chr06:27428250..27428274 (25 bp)	TGTGAAGCTGCACCAGAGGCTGCCA	LOC_Os06g45370
Os.15065.1.S1_at--765--343	1	Chr06:27428237..27428261 (25 bp)	CAGAGGCTGCCATTGTTCCTGGGAG	LOC_Os06g45370
Os.15065.1.S1_at--1069--761	1	Chr06:27428078..27428102 (25 bp)	GGGACCTACTGGAGAACTCTGTATT	LOC_Os06g45370
Os.15065.1.S1_at--1012--513	1	Chr06:27428052..27428076 (25 bp)	GCAAAACCGATGTTTTTACCTGTCA	LOC_Os06g45370
Os.15065.1.S1_at--818--963	1	Chr06:27428030..27428054 (25 bp)	TCAGGTTTTCTGTTTTTGTCTCCGC	LOC_Os06g45370
Os.15065.1.S1_at--1004--459	1	Chr06:27428007..27428031 (25 bp)	GCGACTATGCGGTTTCACTGTGTAA	LOC_Os06g45370
Os.15065.1.S1_at--381--245	1	Chr06:27427973..27427997 (25 bp)	AAAATTAGGCTGCATTTCTCCCGGT	LOC_Os06g45370
Os.15065.1.S1_at--486--1019	1	Chr06:27427922..27427946 (25 bp)	TATATGTAATGCATCCTTTGGCTAC	LOC_Os06g45370

Target Sequence

ATTTCCACCGGACGCTGATATACGGNGGAGTTNCCATGAACCCCAGGGATCACCTTCGGTTGGTCTATGANNCAAATCCT
CTGAGTTTCCTTGCTGNNCAGNCAGGGGNCAGGGGTTCAGATGGCAAGAGCAGAATCCTCTCGATTCAGCCTGTGAAGCT
GCACCAGAGGCTGCCATTGTTCCTGGGAGGCATGGAGGACATGCTTGAGTTGGAAAGCTATGGAGATGTGCAACAGAAGG
TTAATCCTGGATATGAGGTGTGAAGATATATAACCTTAGATAATGAGGTCTGAAGATAATGTAGCATGCGAAAAGAGAAC
AGGGGGACCTACTGGAGAACTCTGTATTTGCAAAACCGATGTTTTTACCTGTCAGGTTTTCTGTTTTTGTCTCCGCGACT
ATGCGGTTTCACTGTGTAATATAGCAGAAAAATTAGGCTGCATTTCTCCCGGTACGAAATGGAAGGGACAACACAAATTT
ATATGTAATGCATCCTTTGGCTAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis