Browse Element(s) Details


Os.20764.1.S1_s_at

Description gb:BQ906631
DB_XREF= gi:22305409
DB_XREF=M015C10
CLONE=M015C10
TID=Os.20764.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.20764 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4393011/11Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g453801/11Vacuolar sorting receptor 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43880Os.50648.1.S1_at11/116+26434370..26438320homogentisic acid geranylgeranyl transferase, putative, expressed
LOC_Os06g43890OsAffx.28090.1.S1_at11/116+26439416..26440928hypothetical protein
LOC_Os06g43900Os.12024.1.S1_at10/116+26441687..26443890Plastid ribosomal protein L35, putative, expressed
LOC_Os06g43910OsAffx.28091.1.S1_at11/116+26449764..26453699myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g43920OsAffx.5097.1.S1_at11/116+26454049..26454964hypothetical protein
LOC_Os06g43930Os.20764.1.S1_s_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43930Os.10169.1.S1_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43940Os.27468.1.S1_at11/116+26470846..26472966expressed protein
LOC_Os06g43950OsAffx.5098.1.S1_at11/116+26477482..26478274expressed protein
LOC_Os06g43960Os.53651.1.S1_at11/116+26481248..26482813expressed protein
LOC_Os06g43960Os.16254.1.S1_at2/116+26481248..26482813expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006623biological_processprotein targeting to vacuole
GO:0006886biological_processintracellular protein transport
GO:0005764cellular_componentlysosome
GO:0005802cellular_componentGolgi trans face
GO:0005887cellular_componentintegral to plasma membrane
GO:0017119cellular_componentGolgi transport complex
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0008233molecular_functionpeptidase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20764.1.S1_s_at--256--10412Chr01:38758853..38759162 (25 bp)
TTATAGGCCAAAATAAGCCACAAAC
NONE
Os.20764.1.S1_s_at--984--4371Chr06:26455504..26455528 (25 bp)
GCCAAAATAAGCCACAAACTCGTTT
LOC_Os06g43930
Os.20764.1.S1_s_at--1014--112Chr08:7594763..7594782 (20 bp)
ATAAGCCACAAACTCGTTTATTTTG
NONE
Os.20764.1.S1_s_at--1050--4393Chr11:19940388..19940408 (21 bp)
GCCACAAACTCGTTTATTTTGACCT
NONE
Os.20764.1.S1_s_at--1156--3292Chr06:26455492..26455516 (25 bp)
CACAAACTCGTTTATTTTGACCTAT
LOC_Os06g43930
Os.20764.1.S1_s_at--172--1996Chr06:27434531..27434552 (22 bp)
ACTCGTTTATTTTGACCTATAAGTG
LOC_Os06g45380
Os.20764.1.S1_s_at--9--4371Chr06:26455448..26455472 (25 bp)
CCACTTACACCCAGTCAGAATCAGA
LOC_Os06g43930
Os.20764.1.S1_s_at--1103--10471Chr06:26455444..26455468 (25 bp)
TTACACCCAGTCAGAATCAGAAATT
LOC_Os06g43930
Os.20764.1.S1_s_at--643--1471Chr06:26455432..26455456 (25 bp)
AGAATCAGAAATTGTGACACCCAAA
LOC_Os06g43930
Os.20764.1.S1_s_at--123--3171Chr06:26455423..26455447 (25 bp)
AATTGTGACACCCAAATATTCCATG
LOC_Os06g43930
Os.20764.1.S1_s_at--1132--11Chr06:26455422..26455446 (25 bp)
ATTGTGACACCCAAATATTCCATGG
LOC_Os06g43930
Target Sequence 
TTATAGGCCAAAATAAGCCACAAACTCGTTTATTTTGACCTATAAGTGGGTTCGCGGCTTACCCACTTACACCCAGTCAG
AATCAGAAATTGTGACACCCAAATATTCCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20764.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis