Browse Element(s) Details


Os.16254.1.S1_at

Description gb:BI802105
DB_XREF= gi:16574809
DB_XREF=H069H05
CLONE=H069H05
TID=Os.16254.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.16254 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g439602/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43930Os.20764.1.S1_s_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43930Os.10169.1.S1_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43940Os.27468.1.S1_at11/116+26470846..26472966expressed protein
LOC_Os06g43950OsAffx.5098.1.S1_at11/116+26477482..26478274expressed protein
LOC_Os06g43960Os.53651.1.S1_at11/116+26481248..26482813expressed protein
LOC_Os06g43960Os.16254.1.S1_at2/116+26481248..26482813expressed protein
LOC_Os06g43970OsAffx.5099.1.S1_at10/116+26488450..26488888hypothetical protein
LOC_Os06g43980Os.51521.1.S1_at11/116+26490477..26493004expressed protein
LOC_Os06g43980Os.51521.1.S2_at10/116+26490477..26493004expressed protein
LOC_Os06g43980OsAffx.15916.1.S1_at1/116+26490477..26493004expressed protein
LOC_Os06g43990Os.16011.1.A1_at11/116+26495540..26497431expressed protein
LOC_Os06g44000OsAffx.28092.1.S1_at11/116+26499618..26500169hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16254.1.S1_at--355--5412Chr06:26481510..26481534 (25 bp)
GAACCGTAGGTTGGTATTGTCTGGT
LOC_Os06g43960
Os.16254.1.S1_at--568--10231Chr06:26478701..26478725 (25 bp)
TATTGTCTGGTGTGGCATCGGTGCC
NONE
Os.16254.1.S1_at--942--3471Chr06:26478669..26478693 (25 bp)
CAGGTAGGGTTTGGTCATCGGACCT
NONE
Os.16254.1.S1_at--1078--7811Chr06:26478657..26478681 (25 bp)
GGTCATCGGACCTTGAGGCCTGAGC
NONE
Os.16254.1.S1_at--367--892Chr06:26478642..26478666 (25 bp)
AGGCCTGAGCTCCTGTCAGTGATGA
NONE
Os.16254.1.S1_at--741--4792Chr06:26479928..26479952 (25 bp)
GCTCCTGTCAGTGATGAATGGCTAT
NONE
Os.16254.1.S1_at--547--5293Chr06:26478619..26478643 (25 bp)
GAATGGCTATTTTGGACTTTCAATC
NONE
Os.16254.1.S1_at--1076--8111Chr06:26478606..26478630 (25 bp)
GGACTTTCAATCTCGATTTTGTGAA
NONE
Os.16254.1.S1_at--981--10391Chr06:26478592..26478614 (23 bp)
TTTTGTGAAGTTTCGCTGTTACCCT
NONE
Os.16254.1.S1_at--301--1211Chr06:26478581..26478606 (25 bp)
AGTTTCGCTGTTACCCTGGCTTGAG
NONE
Os.16254.1.S1_at--507--3791NONE
CTCGTCATTCAGCTACTCTCTGTAA
NONE
Target Sequence 
GAACCGTAGGTTGGTATTGTCTGGTGTGGCATCGGTGCCATGGTGACAGGTAGGGTTTGGTCATCGGACCTTGAGGCCTG
AGCTCCTGTCAGTGATGAATGGCTATTTTGGACTTTCAATCTCGATTTTGTGAAGTTTCGCTGTTACCCTGGCTTGAGCT
CTCCTCGTCATTCAGCTACTCTCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis