Browse Element(s) Details


Os.53651.1.S1_at

Description gb:AK073750.1
DB_XREF= gi:32983773
TID=Os.53651.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53651 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070L21, full insert sequence.
FL= gb:AK073750.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4396011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43930Os.20764.1.S1_s_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43930Os.10169.1.S1_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43940Os.27468.1.S1_at11/116+26470846..26472966expressed protein
LOC_Os06g43950OsAffx.5098.1.S1_at11/116+26477482..26478274expressed protein
LOC_Os06g43960Os.53651.1.S1_at11/116+26481248..26482813expressed protein
LOC_Os06g43960Os.16254.1.S1_at2/116+26481248..26482813expressed protein
LOC_Os06g43970OsAffx.5099.1.S1_at10/116+26488450..26488888hypothetical protein
LOC_Os06g43980Os.51521.1.S1_at11/116+26490477..26493004expressed protein
LOC_Os06g43980Os.51521.1.S2_at10/116+26490477..26493004expressed protein
LOC_Os06g43980OsAffx.15916.1.S1_at1/116+26490477..26493004expressed protein
LOC_Os06g43990Os.16011.1.A1_at11/116+26495540..26497431expressed protein
LOC_Os06g44000OsAffx.28092.1.S1_at11/116+26499618..26500169hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53651.1.S1_at--919--9591Chr06:26482062..26482086 (25 bp)
TCATTGTCAAATCTCTCTCTCTTAC
LOC_Os06g43960
Os.53651.1.S1_at--1033--2491Chr06:26482027..26482051 (25 bp)
AACATCCTCTCTGAACAAAGTGGCA
LOC_Os06g43960
Os.53651.1.S1_at--199--1093Chr06:26482009..26482033 (25 bp)
AGTGGCAACTCACTTGTGTTCAAGG
LOC_Os06g43960
Os.53651.1.S1_at--321--4573Chr06:26481952..26481976 (25 bp)
GCGCGTGGCTGCTTGGATGCTCATC
LOC_Os06g43960
Os.53651.1.S1_at--463--631Chr06:26481936..26481960 (25 bp)
ATGCTCATCCATGGCTATGCGGGTG
LOC_Os06g43960
Os.53651.1.S1_at--1002--8251Chr06:26481813..26481837 (25 bp)
GGCATCACTTTTAACTGGCATTCGA
LOC_Os06g43960
Os.53651.1.S1_at--1139--92Chr06:26481794..26481818 (25 bp)
ATTCGATGTAATGCCATTCGCCGCC
LOC_Os06g43960
Os.53651.1.S1_at--351--8851Chr06:26481733..26481757 (25 bp)
TGATCTTCTCTTCACTGTGTACGCT
LOC_Os06g43960
Os.53651.1.S1_at--1139--6971Chr06:26481715..26481739 (25 bp)
GTACGCTTGCGTGTATCAGTTTGAC
LOC_Os06g43960
Os.53651.1.S1_at--929--1191Chr06:26481606..26481630 (25 bp)
AGTATTTGCTACTCTTCGACACTTC
LOC_Os06g43960
Os.53651.1.S1_at--790--611Chr06:26481566..26481590 (25 bp)
ATGCGGCTGGTTGCCTGGATGCTCA
LOC_Os06g43960
Target Sequence 
TCATTGTCAAATCTCTCTCTCTTACACACACACAAAACATCCTCTCTGAACAAAGTGGCAACTCACTTGTGTTCAAGGGA
TCTTCTTCGGGGCCGCCTCCACCCACGCTCGCGCGTGGCTGCTTGGATGCTCATCCATGGCTATGCGGGTGGTGCCGGGG
GCAGGGAACCGTAGATTAGAGCAAGTATAATAGTACAGCAGGCTATCAGCCAAATCTGGCGAGAAAATTGCATATCTACT
CGCTAGAATGGCATCACTTTTAACTGGCATTCGATGTAATGCCATTCGCCGCCGCCGCCGCCTTCTTCTCCTCCTTCCAA
TCTCTCCTCTGATCTTCTCTTCACTGTGTACGCTTGCGTGTATCAGTTTGACGCTCTACAAACTGAGCTATAAGGGCAAG
CAGAAATTATGGGGAAATTTAACTATTTGCCATTGGATCCATGCCATTGTAACTGGAGTATTTGCTACTCTTCGACACTT
CGGGGCCGCCTCCACCATGCGGCTGGTTGCCTGGATGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis