Browse Element(s) Details


Os.27468.1.S1_at

Description gb:AK105627.1
DB_XREF= gi:32990836
TID=Os.27468.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27468 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-D01, full insert sequence.
FL= gb:AK105627.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4394011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43910OsAffx.28091.1.S1_at11/116+26449764..26453699myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g43920OsAffx.5097.1.S1_at11/116+26454049..26454964hypothetical protein
LOC_Os06g43930Os.20764.1.S1_s_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43930Os.10169.1.S1_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43940Os.27468.1.S1_at11/116+26470846..26472966expressed protein
LOC_Os06g43950OsAffx.5098.1.S1_at11/116+26477482..26478274expressed protein
LOC_Os06g43960Os.53651.1.S1_at11/116+26481248..26482813expressed protein
LOC_Os06g43960Os.16254.1.S1_at2/116+26481248..26482813expressed protein
LOC_Os06g43970OsAffx.5099.1.S1_at10/116+26488450..26488888hypothetical protein
LOC_Os06g43980Os.51521.1.S1_at11/116+26490477..26493004expressed protein
LOC_Os06g43980Os.51521.1.S2_at10/116+26490477..26493004expressed protein
LOC_Os06g43980OsAffx.15916.1.S1_at1/116+26490477..26493004expressed protein
LOC_Os06g43990Os.16011.1.A1_at11/116+26495540..26497431expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27468.1.S1_at--882--911Chr06:26471379..26471403 (25 bp)
AGGCTTGCAGCCATTTCTTGATAGT
LOC_Os06g43940
Os.27468.1.S1_at--897--1192Chr09:4466208..4466510 (25 bp)
AGTATTTACATTTTGCCGGAGCCAC
NONE
Os.27468.1.S1_at--899--10671Chr06:26471228..26471252 (25 bp)
TTCCTTTGTTTTCATCCATGCTTTG
LOC_Os06g43940
Os.27468.1.S1_at--504--3531Chr06:26471212..26471236 (25 bp)
CATGCTTTGCCCCAATGGTATTTGT
LOC_Os06g43940
Os.27468.1.S1_at--279--10331Chr06:26471185..26471209 (25 bp)
TTTACAGTTTTACCAGCAGGCGCCT
LOC_Os06g43940
Os.27468.1.S1_at--318--8111Chr06:26471113..26471137 (25 bp)
GGACGAACCCATCGACTTGTGTGAA
LOC_Os06g43940
Os.27468.1.S1_at--510--71Chr06:26471089..26471113 (25 bp)
ATTGCTTTGCGAATCTTCGGCTTCA
LOC_Os06g43940
Os.27468.1.S1_at--756--10591Chr06:26471074..26471098 (25 bp)
TTCGGCTTCAGCTTATTACGGATGT
LOC_Os06g43940
Os.27468.1.S1_at--350--2511Chr06:26471043..26471067 (25 bp)
AACATCATCTGTTAGTCCCTCGTTA
LOC_Os06g43940
Os.27468.1.S1_at--182--5631Chr06:26470932..26470956 (25 bp)
GACAAATTGTTGTTGCTAATGCCAC
LOC_Os06g43940
Os.27468.1.S1_at--168--4951Chr06:26470891..26470915 (25 bp)
GCATTGCCAGTGGTGCACGCTGGAA
LOC_Os06g43940
Target Sequence 
AGGCTTGCAGCCATTTCTTGATAGTACATGCTAATCTACTCATTTGTTCATGTACAGAGAGACGGAGGGAGTATTTACAT
TTTGCCGGAGCCACAGGCACATTAAACTGTTTGGAATTGGCAATCGGGTTAATCTGAGCCATTCAAGTCATTTCCTTTGT
TTTCATCCATGCTTTGCCCCAATGGTATTTGTTCTTTACAGTTTTACCAGCAGGCGCCTTAATAAGCACGAAGTCTTGGC
AAAATGTTTGTTGGTAATGGCCCCAGGGACGAACCCATCGACTTGTGTGAATTGCTTTGCGAATCTTCGGCTTCAGCTTA
TTACGGATGTAACTTCAACATCATCTGTTAGTCCCTCGTTAGCTTTGGCTAATTGTTTCTTTTTCTGGGGAGGGAATTTT
GTGGCTAAATTTGGAGGTTTTGCTCCATGATATGCAACCAGTTTTCTGACAAATTGTTGTTGCTAATGCCACATGATGAA
ATCAGCAGGCATTGCCAGTGGTGCACGCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis