Browse Element(s) Details


OsAffx.28091.1.S1_at

Description tigr:9634.m04247
TID=OsAffx.28091.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL161580 hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4391011/11myb-like DNA-binding domain, SHAQKYF class family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43870OsAffx.15915.1.S1_at11/116+26422833..26426811expressed protein
LOC_Os06g43880Os.50648.1.S1_at11/116+26434370..26438320homogentisic acid geranylgeranyl transferase, putative, expressed
LOC_Os06g43890OsAffx.28090.1.S1_at11/116+26439416..26440928hypothetical protein
LOC_Os06g43900Os.12024.1.S1_at10/116+26441687..26443890Plastid ribosomal protein L35, putative, expressed
LOC_Os06g43910OsAffx.28091.1.S1_at11/116+26449764..26453699myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g43920OsAffx.5097.1.S1_at11/116+26454049..26454964hypothetical protein
LOC_Os06g43930Os.20764.1.S1_s_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43930Os.10169.1.S1_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43940Os.27468.1.S1_at11/116+26470846..26472966expressed protein
LOC_Os06g43950OsAffx.5098.1.S1_at11/116+26477482..26478274expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0000156molecular_functiontwo-component response regulator activity
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28091.1.S1_at--728--3111Chr06:26453137..26453161 (25 bp)
AATTTCCGGACCTTGCAAACTGTAG
LOC_Os06g43910
OsAffx.28091.1.S1_at--1072--2251Chr06:26453163..26453187 (25 bp)
AAATACTGGCAACCTACAGCACCAT
LOC_Os06g43910
OsAffx.28091.1.S1_at--559--4051Chr06:26453188..26453212 (25 bp)
CGATGTTTCCTGATCTTGGTCACAA
LOC_Os06g43910
OsAffx.28091.1.S1_at--517--2991Chr06:26453211..26453235 (25 bp)
AATGATGGGACATCTTTCCGCCCGT
LOC_Os06g43910
OsAffx.28091.1.S1_at--540--691Chr06:26453340..26453364 (25 bp)
ATGAGCACCATATCACTGTCAGATT
LOC_Os06g43910
OsAffx.28091.1.S1_at--475--5551Chr06:26453395..26453419 (25 bp)
GAAACGACACAAGCCCAGCAGAGAT
LOC_Os06g43910
OsAffx.28091.1.S1_at--806--6331Chr06:26453420..26453444 (25 bp)
GATGCATGACAACTTCTCACTTGGT
LOC_Os06g43910
OsAffx.28091.1.S1_at--41--8591Chr06:26453441..26453465 (25 bp)
TGGTAGTGACTCGAACATCAGTTCT
LOC_Os06g43910
OsAffx.28091.1.S1_at--104--1971Chr06:26453475..26453499 (25 bp)
ACTGATTCAAGCTTCGGTTCTACAT
LOC_Os06g43910
OsAffx.28091.1.S1_at--926--7891Chr06:26453490..26453514 (25 bp)
GGTTCTACATTTCCTGACTTTCATC
LOC_Os06g43910
OsAffx.28091.1.S1_at--964--8891Chr06:26453525..26453549 (25 bp)
TGAGATGCCGGCTCAGATGCTGAAT
LOC_Os06g43910
Target Sequence 
AATTTCCGGACCTTGCAAACTGTAGCAAATACTGGCAACCTACAGCACCATCGATGTTTCCTGATCTTGGTCACAATGAT
GGGACATCTTTCCGCCCGTCGCAGGCGAACATCGCCAATATCAACCAGCTCTCAAGCTTTGCAGCCTCCAGTGGCCAGGA
ACCGATGTTTGGAGATGAACTACATGGTCAAATGTCACCAATCATGAGCACCATATCACTGTCAGATTTCGATGATCAGA
TGGGGTCATTCAACATAGGAAACGACACAAGCCCAGCAGAGATGATGCATGACAACTTCTCACTTGGTAGTGACTCGAAC
ATCAGTTCTTCAACACCAACTGATTCAAGCTTCGGTTCTACATTTCCTGACTTTCATCTCGACAGCCCTGAGATGCCGGC
TCAGATGCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis