Browse Element(s) Details


Os.12024.1.S1_at

Description gb:AK066837.1
DB_XREF= gi:32976855
TID=Os.12024.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12024 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013083N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013083N03, full insert sequence.
FL= gb:AK066837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4390010/11Plastid ribosomal protein L35, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43870OsAffx.15915.1.S1_at11/116+26422833..26426811expressed protein
LOC_Os06g43880Os.50648.1.S1_at11/116+26434370..26438320homogentisic acid geranylgeranyl transferase, putative, expressed
LOC_Os06g43890OsAffx.28090.1.S1_at11/116+26439416..26440928hypothetical protein
LOC_Os06g43900Os.12024.1.S1_at10/116+26441687..26443890Plastid ribosomal protein L35, putative, expressed
LOC_Os06g43910OsAffx.28091.1.S1_at11/116+26449764..26453699myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g43920OsAffx.5097.1.S1_at11/116+26454049..26454964hypothetical protein
LOC_Os06g43930Os.20764.1.S1_s_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43930Os.10169.1.S1_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12024.1.S1_at--607--8971Chr06:26442008..26442115 (25 bp)
TGAAGACCCACAAGGCGTCGGCGAA
LOC_Os06g43900
Os.12024.1.S1_at--211--6211NONE
GAGGCTATCCAAGATGATCCAAGTT
NONE
Os.12024.1.S1_at--103--9851Chr06:26443519..26443543 (25 bp)
TACAACAACGTGACGGGCGCACTGC
LOC_Os06g43900
Os.12024.1.S1_at--14--1851Chr06:26443539..26443563 (25 bp)
ACTGCCCTACCTCAAAGTGAACAGG
LOC_Os06g43900
Os.12024.1.S1_at--317--6411Chr06:26443576..26443600 (25 bp)
GATCTCCTAGGTCTTGCAAACATGC
LOC_Os06g43900
Os.12024.1.S1_at--67--2511Chr06:26443594..26443618 (25 bp)
AACATGCTTCTGTTTCGTTTCATCA
LOC_Os06g43900
Os.12024.1.S1_at--156--10371Chr06:26443651..26443675 (25 bp)
TTTTCTGAATACCAAGGTCCCAAGT
LOC_Os06g43900
Os.12024.1.S1_at--1003--7231Chr06:26443667..26443691 (25 bp)
GTCCCAAGTCATACCAAGCAAGCAC
LOC_Os06g43900
Os.12024.1.S1_at--680--1231Chr06:26443725..26443749 (25 bp)
AGTTGCACTTGCACGAGCTAGTTAT
LOC_Os06g43900
Os.12024.1.S1_at--13--7911Chr06:26443830..26443854 (25 bp)
GGTTGACTATGCAAGGCGTCTCCCA
LOC_Os06g43900
Os.12024.1.S1_at--374--7171Chr06:26443847..26443871 (25 bp)
GTCTCCCATTATACCTGTGACTAAT
LOC_Os06g43900
Target Sequence 
TGAAGACCCACAAGGCGTCGGCGAAGCGGTTCCGGGTGACGGGGAGGGGGAAGATCGTGCGGCGGCGCGCCGGGAAGCAG
CACCTTCTCAGCAAGAAGAACACCAAGCGCAGGAAGAGGCTATCCAAGATGATCCAAGTTAACAAGAGCGACTACAACAA
CGTGACGGGCGCACTGCCCTACCTCAAAGTGAACAGGAATGCAGAATGAGATCTCCTAGGTCTTGCAAACATGCTTCTGT
TTCGTTTCATCAAATTGTAATTTTGTGTATCTTCTTTGTATTTCTTTTCTGAATACCAAGGTCCCAAGTCATACCAAGCA
AGCACAAACAATTATTCATGCCAACATGTTCAAAAATGAGTTGCACTTGCACGAGCTAGTTATTTACAAGTCCTTTTTCC
CCTTTTGACAAAGAAAATTCCAACTGATAATGAAAGCAACTATTAAGGAGTAAGAACATGAGTGGTTGACTATGCAAGGC
GTCTCCCATTATACCTGTGACTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis