Browse Element(s) Details


OsAffx.28090.1.S1_at

Description tigr:9634.m04245
TID=OsAffx.28090.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4389011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43870OsAffx.15915.1.S1_at11/116+26422833..26426811expressed protein
LOC_Os06g43880Os.50648.1.S1_at11/116+26434370..26438320homogentisic acid geranylgeranyl transferase, putative, expressed
LOC_Os06g43890OsAffx.28090.1.S1_at11/116+26439416..26440928hypothetical protein
LOC_Os06g43900Os.12024.1.S1_at10/116+26441687..26443890Plastid ribosomal protein L35, putative, expressed
LOC_Os06g43910OsAffx.28091.1.S1_at11/116+26449764..26453699myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g43920OsAffx.5097.1.S1_at11/116+26454049..26454964hypothetical protein
LOC_Os06g43930Os.20764.1.S1_s_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43930Os.10169.1.S1_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28090.1.S1_at--304--3631Chr06:26440869..26440893 (25 bp)
CTTGCTCAGATGCACCTGCGACCAG
LOC_Os06g43890
OsAffx.28090.1.S1_at--316--6331Chr06:26440861..26440885 (25 bp)
GATGCACCTGCGACCAGCGGCAGAG
LOC_Os06g43890
OsAffx.28090.1.S1_at--853--1091Chr06:26440043..26440067 (25 bp)
AGTGGCAGCGACTGGCAAGCCCGTC
LOC_Os06g43890
OsAffx.28090.1.S1_at--866--8371Chr06:26439925..26439949 (25 bp)
GGCGAGCTCTAGCTCACCGACAGTC
LOC_Os06g43890
OsAffx.28090.1.S1_at--714--4831Chr06:26439914..26439938 (25 bp)
GCTCACCGACAGTCCATGGGAAGGT
LOC_Os06g43890
OsAffx.28090.1.S1_at--847--5311Chr06:26439563..26439919 (25 bp)
GAAGGTGGCGGAAGCGCTCCACATC
LOC_Os06g43890
OsAffx.28090.1.S1_at--546--9211Chr06:26439546..26439570 (25 bp)
TCCACATCGAGTCAGCAACGGTAGC
LOC_Os06g43890
OsAffx.28090.1.S1_at--1141--9651Chr06:26439535..26439559 (25 bp)
TCAGCAACGGTAGCTCAGCCCGATT
LOC_Os06g43890
OsAffx.28090.1.S1_at--455--1671Chr06:26439519..26439543 (25 bp)
AGCCCGATTCCTTTTTGTCGCTTCT
LOC_Os06g43890
OsAffx.28090.1.S1_at--282--91Chr06:26439513..26439537 (25 bp)
ATTCCTTTTTGTCGCTTCTCGCCTA
LOC_Os06g43890
OsAffx.28090.1.S1_at--356--3711Chr06:26439491..26439515 (25 bp)
CTACCCGACAGCTCGACGGAGGCGG
LOC_Os06g43890
Target Sequence 
CTTGCTCAGATGCACCTGCGACCAGCGGCAGAGGAAGCAGGCACGGTGGCTGTCGGCGGAGCTCAATGGAGGAGAGAGTG
GCAGCGACTGGCAAGCCCGTCCGCGGGAGACAGCGCGGCGGTGGGAGCAAAAGGAGAAGAGGAGGGAGATGAGGGAGTCG
GCGAGCTCTAGCTCACCGACAGTCCATGGGAAGGTGGCGGAAGCGCTCCACATCGAGTCAGCAACGGTAGCTCAGCCCGA
TTCCTTTTTGTCGCTTCTCGCCTACCCGACAGCTCGACGGAGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis