Browse Element(s) Details


Os.50648.1.S1_at

Description gb:AY222862.1
DB_XREF= gi:33391143
TID=Os.50648.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50648 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) homogentisic acid geranylgeranyl transferase mRNA, complete cds.
PROD=homogentisic acid geranylgeranyl transferase
FL= gb:AK063383.1 gb:AY222862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4388011/11homogentisic acid geranylgeranyl transferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43850Os.12365.1.S1_at10/116+26407107..26409933ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os06g43850Os.57459.1.S1_x_at1/116+26407107..26409933ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os06g43860Os.4608.3.A1_a_at11/116+26410491..26413838Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os06g43870OsAffx.15915.1.S1_at11/116+26422833..26426811expressed protein
LOC_Os06g43880Os.50648.1.S1_at11/116+26434370..26438320homogentisic acid geranylgeranyl transferase, putative, expressed
LOC_Os06g43890OsAffx.28090.1.S1_at11/116+26439416..26440928hypothetical protein
LOC_Os06g43900Os.12024.1.S1_at10/116+26441687..26443890Plastid ribosomal protein L35, putative, expressed
LOC_Os06g43910OsAffx.28091.1.S1_at11/116+26449764..26453699myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g43920OsAffx.5097.1.S1_at11/116+26454049..26454964hypothetical protein
LOC_Os06g43930Os.20764.1.S1_s_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43930Os.10169.1.S1_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010189biological_processvitamin E biosynthesis
GO:0042362biological_processfat-soluble vitamin biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004659molecular_functionprenyltransferase activity
GO:0010176molecular_functionhomogentisate phytyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50648.1.S1_at--345--1131Chr06:26435804..26435930 (25 bp)
AGTGCATACTCTGTTGATGCTCCGT
LOC_Os06g43880
Os.50648.1.S1_at--537--6331Chr06:26435789..26435810 (22 bp)
GATGCTCCGTTACTCCGGTGGAAAA
LOC_Os06g43880
Os.50648.1.S1_at--957--6831Chr06:26435757..26435781 (25 bp)
GTTTCTCGCTGCATCTTGTATACTA
LOC_Os06g43880
Os.50648.1.S1_at--686--6751Chr06:26435714..26435738 (25 bp)
GTTCAGCTAGCTTTCTTTGCACATA
LOC_Os06g43880
Os.50648.1.S1_at--1039--2091Chr06:26435603..26435627 (25 bp)
ACATGTTCTGAAGAGGCCCTTGGCA
LOC_Os06g43880
Os.50648.1.S1_at--864--2191Chr06:26435575..26435599 (25 bp)
ACAAAGTCGGTGGTTTTCGCAACAT
LOC_Os06g43880
Os.50648.1.S1_at--399--131Chr06:26435549..26435573 (25 bp)
ATTCATGTGTTGCTTTTCTTCAGTT
LOC_Os06g43880
Os.50648.1.S1_at--389--1411Chr06:26435364..26435388 (25 bp)
AGACATTTTGGCGTCGAATCCCTGA
LOC_Os06g43880
Os.50648.1.S1_at--913--4271Chr06:26435344..26435368 (25 bp)
CCTGAGCGTACGTTTGGGTCCAGAA
LOC_Os06g43880
Os.50648.1.S1_at--44--6111Chr06:26435217..26435239 (23 bp)
GAGTGTATTGGCTCTGCATAAACAT
LOC_Os06g43880
Os.50648.1.S1_at--917--711Chr06:26435020..26435155 (25 bp)
ATGATTATCACCGTTTTCGGCCATG
LOC_Os06g43880
Target Sequence 
AGTGCATACTCTGTTGATGCTCCGTTACTCCGGTGGAAAAGGAACGCGTTTCTCGCTGCATCTTGTATACTATTTGTAAG
AGCTGTCTTAGTTCAGCTAGCTTTCTTTGCACATATGCAGCAACATGTTCTGAAGAGGCCCTTGGCACCAACAAAGTCGG
TGGTTTTCGCAACATTATTCATGTGTTGCTTTTCTTCAGTTATAGCTTTATTCAAGGATATTCCAGATATTGATGGTGAC
AGACATTTTGGCGTCGAATCCCTGAGCGTACGTTTGGGTCCAGAAAGAGTGTATTGGCTCTGCATAAACATACTATTAAC
AGCATATGGGGCTGCCATTTTGGCTGGAGCATCATCTACAAATCTATGTCAAATGATTATCACCGTTTTCGGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis