Browse Element(s) Details


OsAffx.5097.1.S1_at

Description tigr:9634.m04248
TID=OsAffx.5097.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4392011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43880Os.50648.1.S1_at11/116+26434370..26438320homogentisic acid geranylgeranyl transferase, putative, expressed
LOC_Os06g43890OsAffx.28090.1.S1_at11/116+26439416..26440928hypothetical protein
LOC_Os06g43900Os.12024.1.S1_at10/116+26441687..26443890Plastid ribosomal protein L35, putative, expressed
LOC_Os06g43910OsAffx.28091.1.S1_at11/116+26449764..26453699myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g43920OsAffx.5097.1.S1_at11/116+26454049..26454964hypothetical protein
LOC_Os06g43930Os.20764.1.S1_s_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43930Os.10169.1.S1_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43940Os.27468.1.S1_at11/116+26470846..26472966expressed protein
LOC_Os06g43950OsAffx.5098.1.S1_at11/116+26477482..26478274expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5097.1.S1_at--1112--10472Chr07:24464623..24464647 (25 bp)
TTACTTTTGGAGTCAAGCAACCCCG
NONE
OsAffx.5097.1.S1_at--387--8553Chr12:15901669..15901716 (25 bp)
TGGAGTCAAGCAACCCCGTAATAGT
NONE
OsAffx.5097.1.S1_at--339--3995Chr12:15901701..15901725 (25 bp)
GCAACCCCGTAATAGTTCACACTTG
NONE
OsAffx.5097.1.S1_at--531--6755Chr12:15901715..15901739 (25 bp)
GTTCACACTTGTTTGGAAATTGGTT
NONE
OsAffx.5097.1.S1_at--462--8972Chr07:24464687..24464711 (25 bp)
TGAACCTAAGCTTAAAAGACAAACT
NONE
OsAffx.5097.1.S1_at--98--1133Chr07:24464883..24464902 (20 bp)
AGTGCAAGCTTTTAGAGAAGCGAAC
NONE
OsAffx.5097.1.S1_at--314--1451Chr06:26454353..26454621 (25 bp)
AGAAGCGAACAAATGGTCCAGAAGG
LOC_Os06g43920
OsAffx.5097.1.S1_at--1120--5311Chr06:26454617..26454641 (25 bp)
GAAGGGACAGACACCTTGGATGACA
LOC_Os06g43920
OsAffx.5097.1.S1_at--666--2131Chr06:26454623..26454647 (25 bp)
ACAGACACCTTGGATGACATTGTTG
LOC_Os06g43920
OsAffx.5097.1.S1_at--591--51Chr06:26454641..26454665 (25 bp)
ATTGTTGCTGAGCTGTTTAATGATG
LOC_Os06g43920
OsAffx.5097.1.S1_at--347--10331Chr06:26454910..26454934 (25 bp)
TTTCATGGAAGGTTATGATGCTGTC
LOC_Os06g43920
Target Sequence 
TTACTTTTGGAGTCAAGCAACCCCGTAATAGTTCACACTTGTTTGGAAATTGGTTAAGAGGTTTTGAACCTAAGCTTAAA
AGACAAACTTGGGTAATTTTCAAAGCAACTCAGTTGTCAAGGCTTTGGTCTTTGCTTCTTAAAGAAGACGAAGGCATTGA
AGTAATCGCGAAGTGCAAGCTTTTAGAGAAGCGAACAAATGGTCCAGAAGGGACAGACACCTTGGATGACATTGTTGCTG
AGCTGTTTAATGATGATTTCATGGAAGGTTATGATGCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis