Browse Element(s) Details


Os.10169.1.S1_at

Description gb:AK068457.1
DB_XREF= gi:32978475
TID=Os.10169.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033124L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151A14, full insert sequence.
FL= gb:AK103281.1 gb:AK068457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4393011/11Serine carboxypeptidase S28 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43880Os.50648.1.S1_at11/116+26434370..26438320homogentisic acid geranylgeranyl transferase, putative, expressed
LOC_Os06g43890OsAffx.28090.1.S1_at11/116+26439416..26440928hypothetical protein
LOC_Os06g43900Os.12024.1.S1_at10/116+26441687..26443890Plastid ribosomal protein L35, putative, expressed
LOC_Os06g43910OsAffx.28091.1.S1_at11/116+26449764..26453699myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g43920OsAffx.5097.1.S1_at11/116+26454049..26454964hypothetical protein
LOC_Os06g43930Os.20764.1.S1_s_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43930Os.10169.1.S1_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43940Os.27468.1.S1_at11/116+26470846..26472966expressed protein
LOC_Os06g43950OsAffx.5098.1.S1_at11/116+26477482..26478274expressed protein
LOC_Os06g43960Os.53651.1.S1_at11/116+26481248..26482813expressed protein
LOC_Os06g43960Os.16254.1.S1_at2/116+26481248..26482813expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005764cellular_componentlysosome
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0008233molecular_functionpeptidase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10169.1.S1_at--878--7091Chr06:26455864..26455963 (25 bp)
GTCACGGAGAAAGGAGCTCATCATT
LOC_Os06g43930
Os.10169.1.S1_at--1156--411Chr06:26455845..26455869 (25 bp)
ATCATTTGGACTTCAGATCAGCAAC
LOC_Os06g43930
Os.10169.1.S1_at--51--6371Chr06:26455813..26455837 (25 bp)
GATCCAGATTGGGTTGTAGAACAAC
LOC_Os06g43930
Os.10169.1.S1_at--889--6211Chr06:26455757..26455781 (25 bp)
GATAGATCAGTACAACGAGGACCTT
LOC_Os06g43930
Os.10169.1.S1_at--751--2591Chr06:26455744..26455768 (25 bp)
AACGAGGACCTTGCACAGATATCAA
LOC_Os06g43930
Os.10169.1.S1_at--541--5031Chr06:26455708..26455732 (25 bp)
GCAGTTACTGCGACAGACAATCGAA
LOC_Os06g43930
Os.10169.1.S1_at--1038--3031Chr06:26455690..26455714 (25 bp)
AATCGAAACATGAGACTGTCTACAC
LOC_Os06g43930
Os.10169.1.S1_at--775--9711Chr06:26455660..26455684 (25 bp)
TCAACTGTTTTTGGCTACATGGAAA
LOC_Os06g43930
Os.10169.1.S1_at--485--3131Chr06:26455621..26455645 (25 bp)
AATTTTTCTTTCTTGCAGGCTGTTA
LOC_Os06g43930
Os.10169.1.S1_at--733--3311Chr06:26455550..26455574 (25 bp)
CACTCAGAAAGGTTGTAAGCGGCTA
LOC_Os06g43930
Os.10169.1.S1_at--840--3431Chr06:26455300..26455324 (25 bp)
CAGTATTGCCAGATGTATTCCCGAA
LOC_Os06g43930
Target Sequence 
GTCACGGAGAAAGGAGCTCATCATTTGGACTTCAGATCAGCAACTAAAGATGATCCAGATTGGGTTGTAGAACAACGAAG
ACAAGAAGTTAAGATCATACAGGGATGGATAGATCAGTACAACGAGGACCTTGCACAGATATCAAAATGAGAAGATGCAG
TTACTGCGACAGACAATCGAAACATGAGACTGTCTACACAGTAATCAACTGTTTTTGGCTACATGGAAAAAATAAGGAAA
AGGAATTTTTCTTTCTTGCAGGCTGTTAGACAGAAAATTAAATTAAGGTAACATACAGTGGAAACTCAATAAGTCACTCA
GAAAGGTTGTAAGCGGCTAACCCGCGAAACCCACTTATAGGCCAAAATAAGCCACAAACTCGTTTATTTTGACCTATAAG
TGGGTTCGCGGCTTACCCACTTACACCCAGTCAGAATCAGAAATTGTGACACCCAAATATTCCATGGNTTCCATTTATCT
CCCAGTAAATAATTGGNTTCTATATCTGCACAGTAAATGGTCNTGCATGTAAAACAAGCGTTATCTCTATAATTCTAAGA
AAGGAACAGTATTGCCAGATGTATTCCCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis